Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12m21
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    28   1.9  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    27   4.5  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    26   5.9  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    26   7.8  

>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = -3

Query: 806 SFTLSIHCLKYIIFMTDNYQIYISNVAVWSI-------IIYVFFSLFITTTVL 669
           SF +  H +K  IF  DN   Y+    V          I Y  +SLFITTTVL
Sbjct: 253 SFFILNHPVKQRIFSIDNPDEYLVPFVVSCFTYFLGDGIEYALYSLFITTTVL 305


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 34  AETCXDRVFFYXPIIEQFFFIGM*IDLHYLLFVYTLKKLHYNFIC 168
           AE C DRV        +F+ IG  + ++ +  V T+  L Y F C
Sbjct: 183 AERCVDRVLTSDSSSSKFYLIGSTVGMYVVGLVLTI--LTYVFFC 225


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +3

Query: 219 DYYLKELSQERCRVN----FIKLVANLKTRYEFVTHIPRVSSLALIS 347
           D ++K  ++  C  N    F+KL+ +L  +    ++   VSSL L+S
Sbjct: 140 DIFMKHATKHSCHFNILKCFLKLLMSLSAKLAVSSNSSTVSSLELVS 186


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 813 SYFIYFINTLFKVYNLYD*QLSNLYFKRGCVVYYYICFFFSL 688
           +YF  F   +   YNL     S + F+RG V+   +   F+L
Sbjct: 75  AYFFGFDKAMLDPYNLNYVSPSTVVFQRGSVIVLELVLLFAL 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,291,771
Number of Sequences: 5004
Number of extensions: 67608
Number of successful extensions: 188
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)