Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12m21
         (856 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0590 - 4813764-4814401,4814785-4814872,4815176-4815376,481...    29   4.7  
07_03_0502 + 18826595-18826660,18826815-18826885,18828963-188290...    29   4.7  
03_01_0256 - 1992298-1993878                                           28   8.3  

>12_01_0590 - 4813764-4814401,4814785-4814872,4815176-4815376,
            4816803-4816830,4817136-4817339,4817352-4819136,
            4820358-4821139
          Length = 1241

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = -3

Query: 557  LKVKKSNGVPP--GLERERGTE*KRNESETYFAEEPR*MY*VT*HITRLSLGRVNVLVDL 384
            ++V KS+G+    G      T   R + ++YF  +P+ +     +ITRL  G   ++  +
Sbjct: 1096 MEVLKSDGIAILIGASDVTTTPVPRLKIQSYFRVDPKDVL----YITRLLAGGFPLVAGI 1151

Query: 383  RHSECFLYLSKL*YQC 336
            RH   F YLS   Y C
Sbjct: 1152 RHGFLFNYLSDGQYYC 1167


>07_03_0502 +
           18826595-18826660,18826815-18826885,18828963-18829056,
           18829575-18831521
          Length = 725

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 556 KGSVAIF*TWTDWHNIHEYWHGKSKK--VYTHIFFKQYKSS 672
           +G++ +   W  W+N +E +HGKS      +H F   Y SS
Sbjct: 486 EGAMFLMLLWRIWYNRNEIYHGKSAPPVSVSHRFIVSYVSS 526


>03_01_0256 - 1992298-1993878
          Length = 526

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 729 GCVVYYYICFFFSLYNNNCTTFVL 658
           G VV Y + FFF+ +  N TTF++
Sbjct: 407 GFVVLYALTFFFANFGPNATTFIV 430


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,019,529
Number of Sequences: 37544
Number of extensions: 341584
Number of successful extensions: 728
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)