Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12m21
(856 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81508-1|CAB04142.1| 331|Caenorhabditis elegans Hypothetical pr... 33 0.26
Z79605-6|CAB01906.3| 323|Caenorhabditis elegans Hypothetical pr... 30 2.4
AL132904-3|CAB60972.1| 718|Caenorhabditis elegans Hypothetical ... 30 2.4
AC006675-3|AAK84550.1| 335|Caenorhabditis elegans Serpentine re... 29 3.2
Z81476-2|CAB03918.1| 1469|Caenorhabditis elegans Hypothetical pr... 28 9.7
Z68219-8|CAD59155.1| 430|Caenorhabditis elegans Hypothetical pr... 28 9.7
Z68219-1|CAA92481.2| 387|Caenorhabditis elegans Hypothetical pr... 28 9.7
Z68216-7|CAD59147.1| 430|Caenorhabditis elegans Hypothetical pr... 28 9.7
>Z81508-1|CAB04142.1| 331|Caenorhabditis elegans Hypothetical
protein F20E11.1 protein.
Length = 331
Score = 33.1 bits (72), Expect = 0.26
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = -2
Query: 810 YFIYFINTLFKVYNLYD*QLSNLYFKRGCVVYYYICFFFSLYNNNCTTFVLFKKNMCVNF 631
+FIYF + K++ ++ +LYF + + CF F+++ N +F+ V+F
Sbjct: 131 FFIYFFPSSEKIFKSLSIKIKHLYFV--IIAKDFSCFVFTVWKRNAAFQTVFQNLTWVDF 188
Query: 630 F 628
F
Sbjct: 189 F 189
>Z79605-6|CAB01906.3| 323|Caenorhabditis elegans Hypothetical
protein ZK678.4 protein.
Length = 323
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/57 (22%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = -3
Query: 809 TSFTLSIHCLKYIIFMTDNYQIYISNVAVWSIIIYVFF---SLFITTTVLLLYCLKK 648
+SF ++IH ++++I+ ++Y+ W+ ++ F +LFI T+ ++ + K
Sbjct: 38 SSFLMAIHAMQFLIYSQEDYERLAFKFGTWTTLMGTFSYLNTLFIRLTINRVFIVIK 94
>AL132904-3|CAB60972.1| 718|Caenorhabditis elegans Hypothetical
protein Y111B2A.3 protein.
Length = 718
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -1
Query: 391 WIYATLNVFYIYRNYDISAREETLGMCVTNSYLVFKLATS 272
W+ +FY YRNYD+S + ++++L++ TS
Sbjct: 22 WVQELEAIFYSYRNYDVSKIRVQQFLDRSSNFLIYDFYTS 61
>AC006675-3|AAK84550.1| 335|Caenorhabditis elegans Serpentine
receptor, class h protein35 protein.
Length = 335
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 825 ISCGSYFIYFINTLFKVYNLYD*QLS-NLYFKRGCV 721
++C S I F + LFK++N+Y S YF G V
Sbjct: 106 VACTSALILFTSRLFKIFNMYRSHCSWQRYFSEGLV 141
>Z81476-2|CAB03918.1| 1469|Caenorhabditis elegans Hypothetical
protein C25F9.2 protein.
Length = 1469
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 218 RLLPKGAESREMSRKLYKTSR 280
+ LPKGAE E+S +LY +R
Sbjct: 347 KALPKGAEKEELSLRLYNLTR 367
>Z68219-8|CAD59155.1| 430|Caenorhabditis elegans Hypothetical
protein T05A1.1a protein.
Length = 430
Score = 27.9 bits (59), Expect = 9.7
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Frame = +2
Query: 143 KNYIIILFVTRFKF---SNTYCVFKNCGRLLPKGAESREMSRKLYKTSR*LKN*IRVRYA 313
K Y ++ +T+F F + +C + RL + + KL K S R +
Sbjct: 230 KGYTFLVLITQFLFPFATMAFCYYNIFSRL------RQRVETKLKKLSE------RSQLL 277
Query: 314 HSESFLPRTDIIVSINIKNIQSGVNPLKR*RVL------TTIV*CAKSLNTFTSAP 463
+ + T+ IVSIN + +Q+G+ +R VL TTI+ C L FT P
Sbjct: 278 ENSTTCGTTNHIVSINAEAVQNGLENKQRLAVLAQQRRTTTILSCMVLLFAFTWLP 333
>Z68219-1|CAA92481.2| 387|Caenorhabditis elegans Hypothetical
protein T05A1.1b protein.
Length = 387
Score = 27.9 bits (59), Expect = 9.7
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Frame = +2
Query: 143 KNYIIILFVTRFKF---SNTYCVFKNCGRLLPKGAESREMSRKLYKTSR*LKN*IRVRYA 313
K Y ++ +T+F F + +C + RL + + KL K S R +
Sbjct: 187 KGYTFLVLITQFLFPFATMAFCYYNIFSRL------RQRVETKLKKLSE------RSQLL 234
Query: 314 HSESFLPRTDIIVSINIKNIQSGVNPLKR*RVL------TTIV*CAKSLNTFTSAP 463
+ + T+ IVSIN + +Q+G+ +R VL TTI+ C L FT P
Sbjct: 235 ENSTTCGTTNHIVSINAEAVQNGLENKQRLAVLAQQRRTTTILSCMVLLFAFTWLP 290
>Z68216-7|CAD59147.1| 430|Caenorhabditis elegans Hypothetical
protein T05A1.1a protein.
Length = 430
Score = 27.9 bits (59), Expect = 9.7
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Frame = +2
Query: 143 KNYIIILFVTRFKF---SNTYCVFKNCGRLLPKGAESREMSRKLYKTSR*LKN*IRVRYA 313
K Y ++ +T+F F + +C + RL + + KL K S R +
Sbjct: 230 KGYTFLVLITQFLFPFATMAFCYYNIFSRL------RQRVETKLKKLSE------RSQLL 277
Query: 314 HSESFLPRTDIIVSINIKNIQSGVNPLKR*RVL------TTIV*CAKSLNTFTSAP 463
+ + T+ IVSIN + +Q+G+ +R VL TTI+ C L FT P
Sbjct: 278 ENSTTCGTTNHIVSINAEAVQNGLENKQRLAVLAQQRRTTTILSCMVLLFAFTWLP 333
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,072,378
Number of Sequences: 27780
Number of extensions: 373828
Number of successful extensions: 1027
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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