Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12m21
         (856 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.7  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   8.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.3  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 687 YNNNCTTFVLFKKNMCVNFF*FSVPIFMY 601
           YNNN     L+ KN  +N     VP+ +Y
Sbjct: 106 YNNNNYNKKLYYKNYIINIEQIPVPVPVY 134


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -3

Query: 746 IYISNVAVWSIIIYVFFSLFITTTVLLLYCLKKICV*TFFDFPCQYSCMLCQ 591
           + I N A+ +   Y  FSL I+  +LL+  L       +  +P      LC+
Sbjct: 64  VIIKNPAMQTATNYYLFSLAISDLILLVLGLPNELSLFWQQYPWVLGVSLCK 115


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -1

Query: 346 DISAREETLGMCVTNSYLV 290
           +++  E+T+G CV N+ ++
Sbjct: 209 EVALIEQTIGTCVANAVVI 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,438
Number of Sequences: 438
Number of extensions: 5202
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)