Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12m18
         (856 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0028 - 18468407-18468859,18469070-18469228,18469361-18470227     31   0.89 

>11_05_0028 - 18468407-18468859,18469070-18469228,18469361-18470227
          Length = 492

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
 Frame = -2

Query: 714 SCCSLGCKTSESCISKKF*IQFSCYLYIDAYRLKM-NIDHPYWYAGSIH-RGHCSLLSPR 541
           SCC +G   + S + K      +C     ++RL M  I+ P     S H RG  +++S  
Sbjct: 194 SCCKIGFLKTTSVLQK-----LNCLRVQHSHRLDMIEINAPM--LSSFHYRGPLTVISLG 246

Query: 540 VFPELCHMS-----WLFLWYYLLTNLPTMAKNIKKVYL 442
              +L  ++     W  +++Y  T LPT+A+N++ ++L
Sbjct: 247 DAVQLRDVNLLLYPWHRMFHYARTKLPTIARNVENLFL 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,361,857
Number of Sequences: 37544
Number of extensions: 310570
Number of successful extensions: 627
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)