Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12m18
         (856 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC036447-1|AAH36447.1|  686|Homo sapiens rhophilin, Rho GTPase b...    31   5.3  
AL831950-1|CAD38597.1|  657|Homo sapiens hypothetical protein pr...    31   5.3  
AJ347750-1|CAC87939.1|  686|Homo sapiens p76RBE protein protein.       31   5.3  
AF423421-1|AAQ04062.1|  686|Homo sapiens rhophilin-like Rho-GTPa...    31   5.3  

>BC036447-1|AAH36447.1|  686|Homo sapiens rhophilin, Rho GTPase
           binding protein 2 protein.
          Length = 686

 Score = 31.1 bits (67), Expect = 5.3
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -2

Query: 543 RVFPELCHMSWLFLWYYLLTNLPTMAKNIKKVYLFIYLFTTRRTNSSLGQ*CNK 382
           R FP    M  LF WY  LT +P   +N+      + LF T    + +G  C++
Sbjct: 184 RFFPPTRQMGLLFTWYDSLTGVPVSQQNLLLEKASV-LFNTGALYTQIGTRCDR 236


>AL831950-1|CAD38597.1|  657|Homo sapiens hypothetical protein
           protein.
          Length = 657

 Score = 31.1 bits (67), Expect = 5.3
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -2

Query: 543 RVFPELCHMSWLFLWYYLLTNLPTMAKNIKKVYLFIYLFTTRRTNSSLGQ*CNK 382
           R FP    M  LF WY  LT +P   +N+      + LF T    + +G  C++
Sbjct: 155 RFFPPTRQMGLLFTWYDSLTGVPVSQQNLLLEKASV-LFNTGALYTQIGTRCDR 207


>AJ347750-1|CAC87939.1|  686|Homo sapiens p76RBE protein protein.
          Length = 686

 Score = 31.1 bits (67), Expect = 5.3
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -2

Query: 543 RVFPELCHMSWLFLWYYLLTNLPTMAKNIKKVYLFIYLFTTRRTNSSLGQ*CNK 382
           R FP    M  LF WY  LT +P   +N+      + LF T    + +G  C++
Sbjct: 184 RFFPPTRQMGLLFTWYDSLTGVPVSQQNLLLEKASV-LFNTGALYTQIGTRCDR 236


>AF423421-1|AAQ04062.1|  686|Homo sapiens rhophilin-like Rho-GTPase
           binding protein protein.
          Length = 686

 Score = 31.1 bits (67), Expect = 5.3
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -2

Query: 543 RVFPELCHMSWLFLWYYLLTNLPTMAKNIKKVYLFIYLFTTRRTNSSLGQ*CNK 382
           R FP    M  LF WY  LT +P   +N+      + LF T    + +G  C++
Sbjct: 184 RFFPPTRQMGLLFTWYDSLTGVPVSQQNLLLEKASV-LFNTGALYTQIGTRCDR 236


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,120,511
Number of Sequences: 237096
Number of extensions: 1982382
Number of successful extensions: 7511
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7499
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10872716010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)