Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12m18
(856 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF273708-1|AAL35411.1| 118|Drosophila melanogaster PFTAIRE-inte... 34 0.22
AE014297-475|AAF54113.3| 118|Drosophila melanogaster CG31483-PA... 34 0.22
BT029401-1|ABK57058.1| 96|Drosophila melanogaster IP02163p pro... 31 2.7
BT023344-1|AAY55760.1| 72|Drosophila melanogaster IP02161p pro... 31 2.7
AE014297-604|AAF54026.1| 72|Drosophila melanogaster CG17935-PA... 31 2.7
>AF273708-1|AAL35411.1| 118|Drosophila melanogaster
PFTAIRE-interacting factor 2 protein.
Length = 118
Score = 34.3 bits (75), Expect = 0.22
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -3
Query: 554 CSPPECSPSCVTCHGSSCGTIC*PIC 477
C P CSP C C CG+ C P C
Sbjct: 13 CCSPCCSPCCPPCCNDCCGSCCSPCC 38
Score = 32.7 bits (71), Expect = 0.66
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -3
Query: 554 CSPPECSPSCVTCHGSSCGTIC*PIC 477
C P C P C C GS C C P C
Sbjct: 17 CCSPCCPPCCNDCCGSCCSPCCGPCC 42
Score = 32.7 bits (71), Expect = 0.66
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -3
Query: 554 CSPPECSPSCVTCHGSSCGTIC*PIC 477
C P C+P C C CG C P C
Sbjct: 84 CCTPCCTPCCTPCCSPCCGPCCSPCC 109
Score = 32.3 bits (70), Expect = 0.87
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 539 CSPSCVTCHGSSCGTIC*PICP 474
CSP C +C G C C P CP
Sbjct: 2 CSPCCGSCCGPCCSPCCSPCCP 23
Score = 32.3 bits (70), Expect = 0.87
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 554 CSPPECSPSCVTCHGSSCGTIC*PIC 477
C PP C+ C +C CG C P C
Sbjct: 21 CCPPCCNDCCGSCCSPCCGPCCSPCC 46
Score = 31.5 bits (68), Expect = 1.5
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 554 CSPPECSPSCVTCHGSSCGTIC*PIC 477
C P C P C C G C C P C
Sbjct: 33 CCSPCCGPCCSPCCGPCCSPCCSPCC 58
Score = 31.1 bits (67), Expect = 2.0
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = -3
Query: 572 TEVIVHCSPPECSPSCVTCHGSSCGTIC*PIC 477
T V C P C+P C C C C P C
Sbjct: 74 TPCCVPCCTPCCTPCCTPCCTPCCSPCCGPCC 105
Score = 29.9 bits (64), Expect = 4.7
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 554 CSPPECSPSCVTCHGSSCGTIC*PIC 477
C P CSP C C C C P C
Sbjct: 37 CCGPCCSPCCGPCCSPCCSPCCTPCC 62
Score = 29.1 bits (62), Expect = 8.1
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 554 CSPPECSPSCVTCHGSSCGTIC*PIC 477
C CSP C C CG C P C
Sbjct: 29 CCGSCCSPCCGPCCSPCCGPCCSPCC 54
Score = 29.1 bits (62), Expect = 8.1
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = -3
Query: 554 CSPPECSPSCVTCHGSSCGTIC*PICPRWQKTLRKC 447
C P C P C C C C P C K C
Sbjct: 41 CCSPCCGPCCSPCCSPCCTPCCTPCCTPCCKCCTPC 76
>AE014297-475|AAF54113.3| 118|Drosophila melanogaster CG31483-PA
protein.
Length = 118
Score = 34.3 bits (75), Expect = 0.22
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -3
Query: 554 CSPPECSPSCVTCHGSSCGTIC*PIC 477
C P CSP C C CG+ C P C
Sbjct: 13 CCSPCCSPCCPPCCNDCCGSCCSPCC 38
Score = 32.7 bits (71), Expect = 0.66
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -3
Query: 554 CSPPECSPSCVTCHGSSCGTIC*PIC 477
C P C P C C GS C C P C
Sbjct: 17 CCSPCCPPCCNDCCGSCCSPCCGPCC 42
Score = 32.7 bits (71), Expect = 0.66
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -3
Query: 554 CSPPECSPSCVTCHGSSCGTIC*PIC 477
C P C+P C C CG C P C
Sbjct: 84 CCTPCCTPCCTPCCSPCCGPCCSPCC 109
Score = 32.3 bits (70), Expect = 0.87
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 539 CSPSCVTCHGSSCGTIC*PICP 474
CSP C +C G C C P CP
Sbjct: 2 CSPCCGSCCGPCCSPCCSPCCP 23
Score = 32.3 bits (70), Expect = 0.87
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 554 CSPPECSPSCVTCHGSSCGTIC*PIC 477
C PP C+ C +C CG C P C
Sbjct: 21 CCPPCCNDCCGSCCSPCCGPCCSPCC 46
Score = 31.5 bits (68), Expect = 1.5
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 554 CSPPECSPSCVTCHGSSCGTIC*PIC 477
C P C P C C G C C P C
Sbjct: 33 CCSPCCGPCCSPCCGPCCSPCCSPCC 58
Score = 31.1 bits (67), Expect = 2.0
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = -3
Query: 572 TEVIVHCSPPECSPSCVTCHGSSCGTIC*PIC 477
T V C P C+P C C C C P C
Sbjct: 74 TPCCVPCCTPCCTPCCTPCCTPCCSPCCGPCC 105
Score = 29.9 bits (64), Expect = 4.7
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 554 CSPPECSPSCVTCHGSSCGTIC*PIC 477
C P CSP C C C C P C
Sbjct: 37 CCGPCCSPCCGPCCSPCCSPCCTPCC 62
Score = 29.1 bits (62), Expect = 8.1
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 554 CSPPECSPSCVTCHGSSCGTIC*PIC 477
C CSP C C CG C P C
Sbjct: 29 CCGSCCSPCCGPCCSPCCGPCCSPCC 54
Score = 29.1 bits (62), Expect = 8.1
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = -3
Query: 554 CSPPECSPSCVTCHGSSCGTIC*PICPRWQKTLRKC 447
C P C P C C C C P C K C
Sbjct: 41 CCSPCCGPCCSPCCSPCCTPCCTPCCTPCCKCCTPC 76
>BT029401-1|ABK57058.1| 96|Drosophila melanogaster IP02163p
protein.
Length = 96
Score = 30.7 bits (66), Expect = 2.7
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -3
Query: 554 CSPPECSPSCVTCHGSSCGTIC*PIC 477
C P C P C C G CG C P C
Sbjct: 34 CGP--CGPCCGPCCGPCCGPCCGPCC 57
>BT023344-1|AAY55760.1| 72|Drosophila melanogaster IP02161p
protein.
Length = 72
Score = 30.7 bits (66), Expect = 2.7
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -3
Query: 554 CSPPECSPSCVTCHGSSCGTIC*PIC 477
C P C P C C G CG C P C
Sbjct: 10 CGP--CGPCCGPCCGPCCGPCCGPCC 33
>AE014297-604|AAF54026.1| 72|Drosophila melanogaster CG17935-PA
protein.
Length = 72
Score = 30.7 bits (66), Expect = 2.7
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -3
Query: 554 CSPPECSPSCVTCHGSSCGTIC*PIC 477
C P C P C C G CG C P C
Sbjct: 10 CGP--CGPCCGPCCGPCCGPCCGPCC 33
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,373,100
Number of Sequences: 53049
Number of extensions: 566593
Number of successful extensions: 1670
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1629
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4106450400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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