Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12m18
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical ...    30   2.4  
AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical ...    30   2.4  
Z19158-6|CAA79575.2|  615|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z19156-3|CAA79564.2|  615|Caenorhabditis elegans Hypothetical pr...    29   5.6  
AF079899-1|AAC83661.1|  615|Caenorhabditis elegans sodium- and c...    29   5.6  
Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U53141-8|AAA96110.3|  572|Caenorhabditis elegans Prion-like-(q/n...    28   7.4  

>AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1b protein.
          Length = 389

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 545 PECSPSCVTCHGSSCGTIC*PICPRWQ-KTLRKCTYLFI 432
           P C+ S   C GS+  ++C  ICP  +  T  +  Y F+
Sbjct: 8   PACAASSACCFGSAACSLCCSICPTTKSSTTTRIMYAFL 46


>AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1a protein.
          Length = 459

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 545 PECSPSCVTCHGSSCGTIC*PICPRWQ-KTLRKCTYLFI 432
           P C+ S   C GS+  ++C  ICP  +  T  +  Y F+
Sbjct: 8   PACAASSACCFGSAACSLCCSICPTTKSSTTTRIMYAFL 46


>Z19158-6|CAA79575.2|  615|Caenorhabditis elegans Hypothetical
           protein T23G5.5 protein.
          Length = 615

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 88  YCIFLTFYYRDCFYSIVIFHXLLFFEYTF 2
           YC+ LT +Y D FY++++   L +   +F
Sbjct: 124 YCVILTAFYVDFFYNVILAWGLHYLYTSF 152


>Z19156-3|CAA79564.2|  615|Caenorhabditis elegans Hypothetical
           protein T23G5.5 protein.
          Length = 615

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 88  YCIFLTFYYRDCFYSIVIFHXLLFFEYTF 2
           YC+ LT +Y D FY++++   L +   +F
Sbjct: 124 YCVILTAFYVDFFYNVILAWGLHYLYTSF 152


>AF079899-1|AAC83661.1|  615|Caenorhabditis elegans sodium- and
           chloride-dependentantidepressant- and cocaine-sensitive
           dopamine transporterprotein.
          Length = 615

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 88  YCIFLTFYYRDCFYSIVIFHXLLFFEYTF 2
           YC+ LT +Y D FY++++   L +   +F
Sbjct: 124 YCVILTAFYVDFFYNVILAWGLHYLYTSF 152


>Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical
           protein F29D10.2 protein.
          Length = 149

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -3

Query: 554 CSPPECSPSCVTCHGSSCGTIC*PIC 477
           C P  C   C TC  + C T C P C
Sbjct: 77  CRPKCCCTCCRTCCCTRCCTCCRPCC 102


>Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical
           protein C06A1.7 protein.
          Length = 149

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -3

Query: 554 CSPPECSPSCVTCHGSSCGTIC*PIC 477
           C P  C   C TC  + C T C P C
Sbjct: 79  CRPKCCCTCCRTCCCTRCCTCCRPCC 104


>Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical
           protein C06A1.6 protein.
          Length = 152

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -3

Query: 554 CSPPECSPSCVTCHGSSCGTIC*PIC 477
           C P  C   C TC  + C T C P C
Sbjct: 82  CRPKCCCTCCRTCCCTRCCTCCRPCC 107


>U53141-8|AAA96110.3|  572|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 13
           protein.
          Length = 572

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 554 CSPPECSPSCV-TCHGSSCGTIC*PIC 477
           CS  +C P+C+ +C  SSC   C P+C
Sbjct: 174 CSS-QCMPACLPSCVQSSCAPACQPMC 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,444,679
Number of Sequences: 27780
Number of extensions: 319421
Number of successful extensions: 999
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)