Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12m17
         (164 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067211-12|AAK66018.2|  276|Caenorhabditis elegans Hypothetical...    27   1.8  
Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquino...    26   4.1  
AF038618-7|AAB92070.2|  227|Caenorhabditis elegans Syaptophysin ...    25   7.2  

>AF067211-12|AAK66018.2|  276|Caenorhabditis elegans Hypothetical
           protein B0205.11 protein.
          Length = 276

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 35  VFYCFRNSFVIKKPINMPNYSYTPTIGRTYVYDNKYY 145
           VF      F+  KPI+ PN+     + R YV  N+ Y
Sbjct: 171 VFVAENTIFLAAKPISGPNFDIEAKLFRFYVVVNQQY 207


>Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical
           protein F44G4.2 protein.
          Length = 160

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +2

Query: 71  KPINMPNYSY-TPTIGRTYV 127
           KPI  P+Y Y TPT GRTY+
Sbjct: 75  KPI--PDYFYRTPTTGRTYI 92


>AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquinone
           oxidoreductaseAGGG subunit protein.
          Length = 160

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +2

Query: 71  KPINMPNYSY-TPTIGRTYV 127
           KPI  P+Y Y TPT GRTY+
Sbjct: 75  KPI--PDYFYRTPTTGRTYI 92


>AF038618-7|AAB92070.2|  227|Caenorhabditis elegans Syaptophysin
           protein 1 protein.
          Length = 227

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 73  FFYYKTVTKTVKYLFICEMVII 8
           FFY+  VT  +  +FIC + +I
Sbjct: 94  FFYFVNVTALIYVIFICFVYVI 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,392,754
Number of Sequences: 27780
Number of extensions: 71809
Number of successful extensions: 228
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 12,740,198
effective HSP length: 35
effective length of database: 11,767,898
effective search space used: 223590062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)