Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12m17
(164 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 21 1.0
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 21 1.8
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 21 1.8
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 21 1.8
M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee homeobox-... 20 2.4
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 20 2.4
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 20 2.4
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 20 2.4
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 20 2.4
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 20 2.4
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 20 2.4
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 20 2.4
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 20 2.4
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 20 2.4
DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex det... 20 3.2
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 19 4.2
DQ666693-1|ABG29167.1| 250|Apis mellifera MAX dimerization prot... 19 4.2
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 19 4.2
AB083209-1|BAC54133.1| 87|Apis mellifera hypothetical protein ... 19 4.2
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 19 5.6
DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein. 18 9.7
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 21.4 bits (43), Expect = 1.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 65 IKKPINMPNYSYTPTIGR 118
+++P PNYS TIG+
Sbjct: 509 VRQPGKAPNYSVNWTIGQ 526
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.6 bits (41), Expect = 1.8
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +2
Query: 107 TIGRTYVYDNKYYKNLGC 160
++ Y Y+N YK L C
Sbjct: 84 SLSNNYNYNNNNYKKLYC 101
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.6 bits (41), Expect = 1.8
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +2
Query: 107 TIGRTYVYDNKYYKNLGC 160
++ Y Y+N YK L C
Sbjct: 84 SLSNNYNYNNNNYKKLYC 101
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.6 bits (41), Expect = 1.8
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +2
Query: 107 TIGRTYVYDNKYYKNLGC 160
++ Y Y+N YK L C
Sbjct: 84 SLSNNYNYNNNNYKKLYC 101
>M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H40. ).
Length = 74
Score = 20.2 bits (40), Expect = 2.4
Identities = 6/16 (37%), Positives = 12/16 (75%)
Frame = -2
Query: 49 KTVKYLFICEMVIISI 2
KT +YL +CE + +++
Sbjct: 28 KTTRYLSVCERLNLAL 43
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.2 bits (40), Expect = 2.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 2 NGNNNHLANK*VFYCFRNSFVIKKPINMPNY 94
N NNN+ K ++Y I P+ +P Y
Sbjct: 98 NNNNNYNNYKKLYYNINYIEQIPVPVPVPIY 128
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.2 bits (40), Expect = 2.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 2 NGNNNHLANK*VFYCFRNSFVIKKPINMPNY 94
N NNN+ K ++Y I P+ +P Y
Sbjct: 98 NNNNNYNNYKKLYYNINYIEQIPVPVPVPIY 128
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.2 bits (40), Expect = 2.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 2 NGNNNHLANK*VFYCFRNSFVIKKPINMPNY 94
N NNN+ K ++Y I P+ +P Y
Sbjct: 98 NNNNNYNNYKKLYYNINYIEQIPVPVPVPIY 128
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.2 bits (40), Expect = 2.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 2 NGNNNHLANK*VFYCFRNSFVIKKPINMPNY 94
N NNN+ K ++Y I P+ +P Y
Sbjct: 98 NNNNNYNNYKKLYYNINYIEQIPVPVPVPIY 128
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.2 bits (40), Expect = 2.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 2 NGNNNHLANK*VFYCFRNSFVIKKPINMPNY 94
N NNN+ K ++Y I P+ +P Y
Sbjct: 98 NNNNNYNNYKKLYYNINYIEQIPVPVPVPIY 128
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.2 bits (40), Expect = 2.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 2 NGNNNHLANK*VFYCFRNSFVIKKPINMPNY 94
N NNN+ K ++Y I P+ +P Y
Sbjct: 98 NNNNNYNNYKKLYYNINYIEQIPVPVPVPIY 128
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.2 bits (40), Expect = 2.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 2 NGNNNHLANK*VFYCFRNSFVIKKPINMPNY 94
N NNN+ K ++Y I P+ +P Y
Sbjct: 98 NNNNNYNNYKKLYYNINYIEQIPVPVPVPIY 128
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 20.2 bits (40), Expect = 2.4
Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Frame = +3
Query: 90 IIHTPPPSG--VLTCTTIN 140
I+H PP S LT TT N
Sbjct: 1362 IVHAPPHSPQITLTATTTN 1380
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 20.2 bits (40), Expect = 2.4
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = +1
Query: 79 KYAELFIHPHHRAY 120
+Y++L +HPH RA+
Sbjct: 37 EYSDL-VHPHWRAF 49
>DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 19.8 bits (39), Expect = 3.2
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 2 NGNNNHLANK*VFYCFRNSFVIKKPINMPNY 94
N NNN+ K ++Y I P+ +P Y
Sbjct: 98 NNNNNYNNYKKLYYNINYIEQIPIPVPVPIY 128
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 19.4 bits (38), Expect = 4.2
Identities = 4/13 (30%), Positives = 9/13 (69%)
Frame = -1
Query: 149 FCNIYCRTRKYAR 111
+C +YC +K+ +
Sbjct: 212 YCRLYCYAQKHVK 224
>DQ666693-1|ABG29167.1| 250|Apis mellifera MAX dimerization protein
protein.
Length = 250
Score = 19.4 bits (38), Expect = 4.2
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 65 LQNCYENSKILIYL 24
L+NC E K+L+ L
Sbjct: 64 LRNCLEKLKVLVPL 77
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 19.4 bits (38), Expect = 4.2
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +3
Query: 81 ICRIIHTPPPSGVLTCT 131
+C HT P +L CT
Sbjct: 158 VCEYDHTWWPYDILNCT 174
>AB083209-1|BAC54133.1| 87|Apis mellifera hypothetical protein
protein.
Length = 87
Score = 19.4 bits (38), Expect = 4.2
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -2
Query: 79 YRFFYY 62
YRFFYY
Sbjct: 82 YRFFYY 87
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 19.0 bits (37), Expect = 5.6
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = -2
Query: 94 IIRHIYRFFYYKTVTKTVKYLFICEMV 14
IIR F+ + TV F+C +V
Sbjct: 228 IIRRKTLFYTVNLILPTVLISFLCVLV 254
>DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein.
Length = 495
Score = 18.2 bits (35), Expect = 9.7
Identities = 4/7 (57%), Positives = 7/7 (100%)
Frame = +3
Query: 81 ICRIIHT 101
+CR++HT
Sbjct: 84 VCRVLHT 90
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,682
Number of Sequences: 438
Number of extensions: 897
Number of successful extensions: 21
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 34
effective length of database: 131,451
effective search space used: 2629020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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