Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12m11
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    29   1.0  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    28   1.8  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    27   2.4  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    27   3.2  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    26   5.6  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 324 TCGRCRCEQCARPRPLPSRWLCGSCLCSAEACVDYAS 434
           T G C    C R R  PS++ C SC C+  + +++ S
Sbjct: 399 TNGGCYSYIC-RSRSCPSKYQCYSCRCARNSSLEFTS 434


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
 Frame = +2

Query: 590 GGGSGA-VRAVSPLRLSLS--GPSAAALQYYLVPPRAARALRXVESS 721
           GG SG+ V  +S   ++L+  G +++A  +YL   R  RALR +E++
Sbjct: 228 GGSSGSPVLDISGAAVALNSGGSNSSASSFYLPLDRVVRALRCIENN 274


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
 Frame = +2

Query: 590 GGGSGAV---RAVSPLRLSLSGPSAAALQYYLVPPRAARALRXVES----SGATALYKYL 748
           GG SG+    R  + + L   G   AA  Y+L   R  RALR +++    +  T   ++L
Sbjct: 213 GGSSGSPVVERNGNVVALQAGGHMIAATDYFLPLDRPLRALRCLQNNTPITRGTIQAQFL 272

Query: 749 LXSGXLRNRAGVDSXIAVXVR 811
           + +    +R G+DS +   VR
Sbjct: 273 IKTFDECSRLGLDSAMEEKVR 293


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +3

Query: 309 SIVCETCGRCRCEQCA--RPRPLPSRWLCGS 395
           S +  TCG   CEQCA  R R  P+   CG+
Sbjct: 263 SPIATTCGHHFCEQCAITRYRKTPTCIQCGA 293


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 635 SLSGPSAAALQYYLVPPRAARALRXVESSGA 727
           S+S PS +  Q +  PP + + L   ESSG+
Sbjct: 155 SVSDPSPSTAQNHRSPPASCKRLSSCESSGS 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,967,552
Number of Sequences: 5004
Number of extensions: 24557
Number of successful extensions: 49
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)