Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12m11
         (816 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0008 + 7332224-7332700,7335136-7335153,7335747-7335848,733...    31   1.4  
01_01_0698 - 5400401-5401015                                           29   4.4  
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481...    29   5.8  
04_04_1070 + 30579263-30579861,30579970-30580095,30580190-30580394     29   5.8  
04_03_0193 + 12477565-12478229,12478298-12478423,12478508-12478688     28   7.7  

>05_03_0008 +
           7332224-7332700,7335136-7335153,7335747-7335848,
           7336927-7337202,7337474-7337674
          Length = 357

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 452 LHAAHARRVVNACFRAA*TGAAQPARG*RPRSSALLAATSPARFA 318
           LH  H+     A F  +  G+ Q   G  PRS A  +  SP+RFA
Sbjct: 266 LHHVHSISPSTASFARSPFGSLQHNSGHTPRSPATFSTASPSRFA 310


>01_01_0698 - 5400401-5401015
          Length = 204

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
 Frame = +3

Query: 318 CETCG---RCRCEQCARPRP-LPSRWLCGSCLCSAEACVD 425
           CE CG    C  E   R R     RW+CG C  +A A  D
Sbjct: 86  CECCGMQEECTPEYARRVRERYCGRWVCGLCAAAASAEAD 125


>12_02_0616 -
           21246374-21246462,21246605-21247702,21247800-21248110,
           21248550-21249251,21252802-21252912,21253396-21253481,
           21253753-21253862,21254085-21254236,21254656-21254765
          Length = 922

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
 Frame = +3

Query: 372 PSRWLCGSCLCSAEACVDYA---SCMCCVKALF 461
           PS W+C +  C A    D      C CC+  LF
Sbjct: 327 PSTWICKNAACKAVLTADNTFCKRCSCCICHLF 359


>04_04_1070 + 30579263-30579861,30579970-30580095,30580190-30580394
          Length = 309

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = -3

Query: 403 HRQEP----HSQREGSGRGRAHCSQRHRPHVSHTI 311
           H+++P    HS+   +G GR HCS+R +  V  TI
Sbjct: 175 HKRKPCAGGHSEATANG-GRCHCSKRRKNRVKRTI 208


>04_03_0193 + 12477565-12478229,12478298-12478423,12478508-12478688
          Length = 323

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 403 HRQEPHSQREGSGRGRAHCSQRHRPHVSHTI 311
           H +     + GS  GR HCS+R +  V  TI
Sbjct: 200 HSENVAGGKYGSTGGRCHCSKRRKHRVKRTI 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,463,107
Number of Sequences: 37544
Number of extensions: 279717
Number of successful extensions: 985
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)