Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12m11
         (816 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta p...    29   3.0  
U64605-3|AAF98605.3|  423|Caenorhabditis elegans Hypothetical pr...    29   5.3  
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ...    28   7.0  

>Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical
           protein ZK1058.2 protein.
          Length = 809

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +3

Query: 327 CGRCRCEQCARPRPLPSRWLCGSCLCSAEACVDYASCMCC 446
           CGRCRC          S   C  C      CV+Y +C+ C
Sbjct: 625 CGRCRCFDSPDGNRY-SGAKCEICPTCPTKCVEYKNCVMC 663


>U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta
           pat-3 protein.
          Length = 809

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +3

Query: 327 CGRCRCEQCARPRPLPSRWLCGSCLCSAEACVDYASCMCC 446
           CGRCRC          S   C  C      CV+Y +C+ C
Sbjct: 625 CGRCRCFDSPDGNRY-SGAKCEICPTCPTKCVEYKNCVMC 663


>U64605-3|AAF98605.3|  423|Caenorhabditis elegans Hypothetical
           protein C05D9.3 protein.
          Length = 423

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 11/56 (19%)
 Frame = +3

Query: 309 SIVCETCGRCRCEQCARPRPLPSRWLC----GSC-------LCSAEACVDYASCMC 443
           S VC   G+C+C QC   +P  +   C     SC       +CS     D   C C
Sbjct: 277 SPVCSASGKCKCGQCQCNKPTVTGKFCQCDNDSCPLAVNGKVCSGNGVCDCGVCKC 332


>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
            protein H20J04.2 protein.
          Length = 1427

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = +3

Query: 306  DSIVCETCGRCRCEQCAR---PRPLPSRWLCGSC 398
            D ++C  C  C   +CA+       P+ W+C SC
Sbjct: 1126 DLVLCSECDNCYHLKCAKLDVNSDAPADWMCTSC 1159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,692,838
Number of Sequences: 27780
Number of extensions: 171352
Number of successful extensions: 461
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)