Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12m09
(437 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 189 7e-49
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 189 7e-49
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 29 1.1
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 29 1.1
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 29 1.1
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 29 1.1
U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon gu... 29 1.5
U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon gu... 29 1.5
AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr pro... 29 1.5
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 28 2.6
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 28 2.6
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 28 2.6
Z34989-1|CAA84441.1| 404|Caenorhabditis elegans Ndr protein kin... 28 3.4
Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical pr... 27 4.5
AC024805-8|AAK39337.2| 169|Caenorhabditis elegans Hypothetical ... 27 4.5
Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical pr... 27 6.0
U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical pr... 27 7.9
AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-li... 27 7.9
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 27 7.9
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 27 7.9
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 27 7.9
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 27 7.9
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 27 7.9
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 189 bits (461), Expect = 7e-49
Identities = 87/134 (64%), Positives = 107/134 (79%), Gaps = 2/134 (1%)
Frame = -1
Query: 398 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 219
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MGK
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Query: 218 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 45
KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P+K++K + +FEE
Sbjct: 61 KIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEE 120
Query: 44 RYKSGKNKWFFQKL 3
RYK+GKNKWFF KL
Sbjct: 121 RYKTGKNKWFFTKL 134
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 189 bits (461), Expect = 7e-49
Identities = 87/134 (64%), Positives = 107/134 (79%), Gaps = 2/134 (1%)
Frame = -1
Query: 398 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 219
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MGK
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Query: 218 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 45
KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P+K++K + +FEE
Sbjct: 61 KIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEE 120
Query: 44 RYKSGKNKWFFQKL 3
RYK+GKNKWFF KL
Sbjct: 121 RYKTGKNKWFFTKL 134
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 29.5 bits (63), Expect = 1.1
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -1
Query: 392 KIMKPGKVVLVLSGRYAGRKAIVVK 318
K + PG V++VL+GR+ G++ + +K
Sbjct: 69 KTLTPGTVLIVLAGRHKGKRVVFLK 93
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -1
Query: 269 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 120
AG++R ++ + NK KR KI K YNHL+P T+D+S K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -1
Query: 269 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 120
AG++R ++ + NK KR KI K YNHL+P T+D+S K
Sbjct: 386 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 430
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -1
Query: 269 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 120
AG++R ++ + NK KR KI K YNHL+P T+D+S K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform a protein.
Length = 476
Score = 29.1 bits (62), Expect = 1.5
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = -1
Query: 299 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 138
SD P A I R+ + +R+G + K PFVK +++NH+ P R TV
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 402
Query: 137 --DFS-FEKFSAKDLKDP 93
D S F+ F +DL P
Sbjct: 403 IDDTSNFDDFPDEDLTWP 420
>U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform b protein.
Length = 474
Score = 29.1 bits (62), Expect = 1.5
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = -1
Query: 299 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 138
SD P A I R+ + +R+G + K PFVK +++NH+ P R TV
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 402
Query: 137 --DFS-FEKFSAKDLKDP 93
D S F+ F +DL P
Sbjct: 403 IDDTSNFDDFPDEDLTWP 420
>AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr
protein kinase protein.
Length = 469
Score = 29.1 bits (62), Expect = 1.5
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = -1
Query: 299 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 138
SD P A I R+ + +R+G + K PFVK +++NH+ P R TV
Sbjct: 336 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 395
Query: 137 --DFS-FEKFSAKDLKDP 93
D S F+ F +DL P
Sbjct: 396 IDDTSNFDDFPDEDLTWP 413
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +1
Query: 49 SKRTRVLK-RSFLRLAGSFRSFALNFSKLKSTV 144
S+ T V + +SFL L G +R F LNF+++ S++
Sbjct: 1250 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1282
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +1
Query: 49 SKRTRVLK-RSFLRLAGSFRSFALNFSKLKSTV 144
S+ T V + +SFL L G +R F LNF+++ S++
Sbjct: 1153 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1185
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +1
Query: 49 SKRTRVLK-RSFLRLAGSFRSFALNFSKLKSTV 144
S+ T V + +SFL L G +R F LNF+++ S++
Sbjct: 1164 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1196
>Z34989-1|CAA84441.1| 404|Caenorhabditis elegans Ndr protein kinase
protein.
Length = 404
Score = 27.9 bits (59), Expect = 3.4
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = -1
Query: 299 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 138
SD P A I R+ + +R+G + K PFVK +++NH+ P R TV
Sbjct: 285 SDVPISIEAKATIKRFCCERERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 344
Query: 137 --DFS-FEKFSAKDLKDP 93
D S F+ F +DL P
Sbjct: 345 IDDTSNFDDFPDEDLTWP 362
>Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical
protein C29F3.1 protein.
Length = 755
Score = 27.5 bits (58), Expect = 4.5
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -1
Query: 269 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 120
AG++R V + N+ KR KI + YNHL+P T+D+S K
Sbjct: 386 AGVERGQNHVATHL--NRQLKRQKISKLEREKIYNHLVP---TIDYSAMK 430
>AC024805-8|AAK39337.2| 169|Caenorhabditis elegans Hypothetical
protein Y51H7C.4 protein.
Length = 169
Score = 27.5 bits (58), Expect = 4.5
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 168 IVYNLDERLYLGPLVDFILSHPLVHFPGVPVDTSDEGMPVWLVGGTFVVI 317
I + L ER PL+ L ++ G +S+ +P+WL G F+++
Sbjct: 54 IRFFLSERS-AAPLISMSLGQTAIYLSGTIDLSSEPPIPIWLRNGDFLIM 102
>Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical
protein C09G5.4 protein.
Length = 323
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -2
Query: 298 PTSHTGMPSSLVSTGTPGKCTRGWERIKSTRGP 200
P G P + + G PG+ RG +R GP
Sbjct: 175 PAGDAGAPGQVGAPGNPGQAGRGGQRSHGLPGP 207
>U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical
protein F31D5.4 protein.
Length = 989
Score = 26.6 bits (56), Expect = 7.9
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 54 TYSRVETQLLTFSRVFQVFCAEFFKAEVNCITCWHQVIIVYNLDERLYLGPLV 212
TYS + L ++V ++ A V +T + + I++NLD LY+ P +
Sbjct: 367 TYSEMGANL-NATQVAEISTILINSANVPGLTAENSMAILHNLDNMLYVSPTI 418
>AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-like
protein MTH-2 protein.
Length = 971
Score = 26.6 bits (56), Expect = 7.9
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 54 TYSRVETQLLTFSRVFQVFCAEFFKAEVNCITCWHQVIIVYNLDERLYLGPLV 212
TYS + L ++V ++ A V +T + + I++NLD LY+ P +
Sbjct: 349 TYSEMGANL-NATQVAEISTILINSANVPGLTAENSMAILHNLDNMLYVSPTI 400
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 26.6 bits (56), Expect = 7.9
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +3
Query: 252 VPVDTSDEGMPVWLVGGTFVVILDYDSLATRVPAT*DQHYFTRLHYFAHLGGIFPLLVDI 431
V V + EG +W + F + L +PA D H + H+ + P + D
Sbjct: 3428 VTVQGTSEGNKLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWVPPEIFDP 3487
Query: 432 E 434
E
Sbjct: 3488 E 3488
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 26.6 bits (56), Expect = 7.9
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +3
Query: 252 VPVDTSDEGMPVWLVGGTFVVILDYDSLATRVPAT*DQHYFTRLHYFAHLGGIFPLLVDI 431
V V + EG +W + F + L +PA D H + H+ + P + D
Sbjct: 3428 VTVQGTSEGNKLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWVPPEIFDP 3487
Query: 432 E 434
E
Sbjct: 3488 E 3488
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 26.6 bits (56), Expect = 7.9
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +3
Query: 252 VPVDTSDEGMPVWLVGGTFVVILDYDSLATRVPAT*DQHYFTRLHYFAHLGGIFPLLVDI 431
V V + EG +W + F + L +PA D H + H+ + P + D
Sbjct: 3428 VTVQGTSEGNKLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWVPPEIFDP 3487
Query: 432 E 434
E
Sbjct: 3488 E 3488
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 26.6 bits (56), Expect = 7.9
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +3
Query: 252 VPVDTSDEGMPVWLVGGTFVVILDYDSLATRVPAT*DQHYFTRLHYFAHLGGIFPLLVDI 431
V V + EG +W + F + L +PA D H + H+ + P + D
Sbjct: 3428 VTVQGTSEGNKLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWVPPEIFDP 3487
Query: 432 E 434
E
Sbjct: 3488 E 3488
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 26.6 bits (56), Expect = 7.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -2
Query: 298 PTSHTGMPSSLVSTGTPGKCTRGWERIKSTRGP 200
PT G P G+PG RG +R + GP
Sbjct: 181 PTGDAGAPGQPGHPGSPGNPGRGGQRSRGLPGP 213
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,590,336
Number of Sequences: 27780
Number of extensions: 218390
Number of successful extensions: 839
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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