Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12m04
         (211 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    25   1.4  
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    24   2.4  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    24   2.4  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    24   3.2  
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    23   4.2  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    23   4.2  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    23   5.5  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    23   5.5  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    23   7.3  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    23   7.3  
SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomy...    22   9.6  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    22   9.6  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    22   9.6  

>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 194 LWIFYSFLPP*ILRIAEVTLVN 129
           L +FY+F+PP       VTL+N
Sbjct: 277 LLVFYTFIPPRFTIQTSVTLIN 298


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 146 EVTLVNFMDQCSS*EAEYSTNGCNRVAAC 60
           EV   N MD+C +  +E    GC+ +  C
Sbjct: 259 EVICENLMDRCIASNSESCGIGCDNMTIC 287


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 27  ILLHYQQSSFFACSYPVTTISRIFCLSGTAL 119
           +L +  Q+  F CS  +T     FCLSG+ +
Sbjct: 89  VLRYPAQAMCFRCSLCMTVNDVYFCLSGSQI 119


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 51  KTADNGEECKSFV 13
           K A+NG +C+SFV
Sbjct: 238 KVAENGADCRSFV 250


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 131 NFMDQCSS*EAEYSTNGCNRVAAC 60
           N MD C + + E +  GC+ +  C
Sbjct: 261 NLMDNCIASDTETTGLGCDNMTVC 284


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 43  SSLHFLHAATLLQPLVEYSASQELHW 120
           S  H LHA TL    VEY+  + L W
Sbjct: 239 SIFHVLHAFTLFDTTVEYNI-EPLLW 263


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 52  HFLHAATLLQPLVEYSAS 105
           H  +   L+QPL+EYS S
Sbjct: 89  HEYNVFDLIQPLIEYSGS 106


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 3   SIIKQKTCILLHYQQSSFFACSYPVTTISRIFCLSGTALV 122
           SIIK+   I+ H   S     S   T  S++  LSG++++
Sbjct: 691 SIIKKMIDIVRHENDSLQIDTSQQPTVFSQVTSLSGSSIL 730


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 70  TLLQPLVEYSASQELHW 120
           T+ QP ++   SQELH+
Sbjct: 402 TIFQPQIDIFISQELHY 418


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 143 LQLFSKFTGVKNY 181
           L L+SKFTG+K +
Sbjct: 824 LGLYSKFTGIKEF 836


>SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 136

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 67  ATLLQPLVEYSASQELHWSMKFTK 138
           A+  +P  E  +  ELHW++  T+
Sbjct: 13  ASSKKPKTEKQSDHELHWALNETE 36


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 42  QQSSFFACSYPVTTISRIFCLSGTALVHEVYQSDFSYSQNS 164
           +QSSF +   P+        LS  ALV E     +SYS  +
Sbjct: 254 RQSSFISSVNPLEADDTRETLSEGALVQESLPMAYSYSDTN 294


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 64  AATLLQPLVEYSASQELHWSMKFTKVT 144
           AAT       Y  +Q +   MKFTK T
Sbjct: 400 AATTSSSFESYHNTQTIQSPMKFTKAT 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 886,021
Number of Sequences: 5004
Number of extensions: 14103
Number of successful extensions: 34
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)