Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12m04
         (211 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0639 - 4678993-4679034,4679880-4679945,4680040-4680150,468...    25   6.3  

>03_01_0639 -
           4678993-4679034,4679880-4679945,4680040-4680150,
           4680266-4680304,4680394-4680493,4680597-4680712,
           4680897-4681035,4681151-4681222,4681331-4681434,
           4681616-4681867
          Length = 346

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +3

Query: 36  HYQQSSFFACSYPVTTISRIFCLSGTALVHEVYQSDFSYSQNSR 167
           ++   SFF   Y V  ++ +  ++   L ++VY SD    +N +
Sbjct: 91  YHHVGSFFGKRYFVLLVASVLVITWLNLSNDVYDSDTGADKNKK 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,300,330
Number of Sequences: 37544
Number of extensions: 81271
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 14,793,348
effective HSP length: 49
effective length of database: 12,953,692
effective search space used: 259073840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)