Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12m04
         (211 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    25   0.24 
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    24   0.74 
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    24   0.74 
AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein ...    24   0.74 
AJ302660-1|CAC35525.1|  195|Anopheles gambiae hypothetical prote...    23   1.7  
AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    21   5.2  
AF515523-1|AAM61890.1|  222|Anopheles gambiae glutathione S-tran...    21   5.2  
AF004916-1|AAB94672.1|  686|Anopheles gambiae pro-phenol oxidase...    21   5.2  
AJ304411-1|CAC39104.1|  187|Anopheles gambiae LDL receptor protein.    20   9.1  

>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 25.4 bits (53), Expect = 0.24
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 61  HAATLLQPLVEYSASQELHWSMKF 132
           +A  + +P+V Y A   +HWS  F
Sbjct: 447 YALVMARPMVLYQADHPVHWSPVF 470


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.8 bits (49), Expect = 0.74
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 5   HHQTKDLHSSPLSAVFIFCMQLP 73
           HH+T D+H  P     +F   LP
Sbjct: 319 HHRTADIHEMPPWIKSVFLQWLP 341


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.8 bits (49), Expect = 0.74
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 5   HHQTKDLHSSPLSAVFIFCMQLP 73
           HH+T D+H  P     +F   LP
Sbjct: 319 HHRTADIHEMPPWIKSVFLQWLP 341


>AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein
           protein.
          Length = 705

 Score = 23.8 bits (49), Expect = 0.74
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 197 LLWIFYSFLPP*ILRIA-EVTLVNFMDQC 114
           LLW    F PP +L +A ++ LV ++++C
Sbjct: 471 LLWFGVLFAPPLLLLVALKLLLVFYVNKC 499


>AJ302660-1|CAC35525.1|  195|Anopheles gambiae hypothetical protein
           protein.
          Length = 195

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 40  ISSLHFLHAATLLQPLVEYSASQELHWS 123
           I S+  L AA LLQPL+       L WS
Sbjct: 6   IISVPLLSAAVLLQPLLAAPIFWFLPWS 33


>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +2

Query: 5   HHQTKDLHSSPLSAVFIFCMQLPC 76
           HH+  D H        IF   LPC
Sbjct: 334 HHRNADTHEMSDWVRVIFLYWLPC 357


>AF515523-1|AAM61890.1|  222|Anopheles gambiae glutathione
           S-transferase u2 protein.
          Length = 222

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 208 AQLVYCGFSIVFYPR 164
           A  V+CG  +  YPR
Sbjct: 168 ASAVHCGLDLTNYPR 182


>AF004916-1|AAB94672.1|  686|Anopheles gambiae pro-phenol oxidase
           subunit 2 protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 122 P*SLPK*LQLFSKFTGVKNYRKSTINQ 202
           P   P+ +Q F  F  + NY   T+NQ
Sbjct: 591 PKGTPEGMQ-FDLFAMISNYADDTVNQ 616


>AJ304411-1|CAC39104.1|  187|Anopheles gambiae LDL receptor
          protein.
          Length = 187

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 69 SCMQKMKTADNGEECKSF 16
          +C   ++  DNG+ CKS+
Sbjct: 25 ACPIGIQLKDNGKTCKSW 42


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,113
Number of Sequences: 2352
Number of extensions: 3269
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 47
effective length of database: 453,435
effective search space used:  9975570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)