Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12m04
         (211 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC066987-1|AAH66987.1|  242|Homo sapiens DPY19L2P1 protein protein.    28   6.3  
AK124862-1|BAC85970.1|  123|Homo sapiens 3-sialyltransferase; GM...    28   6.3  

>BC066987-1|AAH66987.1|  242|Homo sapiens DPY19L2P1 protein protein.
          Length = 242

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 10  SNKRLAFFSIISSLHFLHAATLLQPLVEYSASQELHWSMKF 132
           S   L+    ++ LH+LH  TL +    +S    L W M F
Sbjct: 101 SRTTLSIAIFVAILHWLHLVTLFENDRHFSHLSSLEWEMTF 141


>AK124862-1|BAC85970.1|  123|Homo sapiens 3-sialyltransferase; GM3
           protein.
          Length = 123

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +3

Query: 12  KQKTCILLHYQQSSFFACSYPVTTISRIFCLSGTALVHEVYQSDFSYSQN 161
           K  TC  + +    FF+ S  V TI  I  +  T L  EV  + F Y  N
Sbjct: 22  KMVTCAKIFFYFLVFFSLSQNVPTIGVIAVVLATHLCDEVSLAGFGYDLN 71


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,147,089
Number of Sequences: 237096
Number of extensions: 541201
Number of successful extensions: 542
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 76,859,062
effective HSP length: 48
effective length of database: 65,478,454
effective search space used: 1375047534
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)