Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12m04
         (211 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75550-2|CAA99928.2|  421|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AC006714-7|AAK29718.3|  612|Caenorhabditis elegans Hypothetical ...    26   4.2  
AF016449-5|AAG23995.1|  343|Caenorhabditis elegans Serpentine re...    25   5.6  
U58728-4|AAX55696.1|  158|Caenorhabditis elegans Synthetic letha...    25   7.3  
U58728-3|AAX55695.1|  305|Caenorhabditis elegans Synthetic letha...    25   7.3  
AY223545-1|AAO73070.1|  158|Caenorhabditis elegans SYM-3B protein.     25   7.3  
AY221634-1|AAO66457.1|  305|Caenorhabditis elegans SYM-3A protein.     25   7.3  
U97403-7|AAB52475.2|  179|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>Z75550-2|CAA99928.2|  421|Caenorhabditis elegans Hypothetical
           protein T22C1.3 protein.
          Length = 421

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 30  LLHYQQSSFF-ACSYPVTTISRIFCLSGTALVHEVYQSDFSYS 155
           +LH+    F  +  +P  T++++  L     VH+VY+  F Y+
Sbjct: 301 ILHFTIIGFLVSIFFPYPTLNQVSLLLAFLPVHDVYKKHFRYT 343


>AC006714-7|AAK29718.3|  612|Caenorhabditis elegans Hypothetical
           protein Y119D3B.11 protein.
          Length = 612

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 33  LHYQQSSFFACSYPVTTISRIFCLS 107
           + Y ++ FFAC Y ++ +SR   L+
Sbjct: 282 MKYLKNRFFACDYSISALSRAIQLA 306


>AF016449-5|AAG23995.1|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein185 protein.
          Length = 343

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +3

Query: 3   SIIKQKTCILLHYQQSSFFACSYPVTTISRIFCLSGTALVHEVY 134
           ++ K+  C+   +Q + FF  S  ++TI   F +    ++ EV+
Sbjct: 170 AVFKRIPCLPEFFQNAPFFVLSIEISTIIIAFTVLVLVVISEVF 213


>U58728-4|AAX55696.1|  158|Caenorhabditis elegans Synthetic lethal
           with mec protein3, isoform b protein.
          Length = 158

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 26  HSSPLSAVFIFCMQLPC 76
           HS+  +  F+FC ++PC
Sbjct: 54  HSASFNTRFVFCCRIPC 70


>U58728-3|AAX55695.1|  305|Caenorhabditis elegans Synthetic lethal
           with mec protein3, isoform a protein.
          Length = 305

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 26  HSSPLSAVFIFCMQLPC 76
           HS+  +  F+FC ++PC
Sbjct: 54  HSASFNTRFVFCCRIPC 70


>AY223545-1|AAO73070.1|  158|Caenorhabditis elegans SYM-3B protein.
          Length = 158

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 26  HSSPLSAVFIFCMQLPC 76
           HS+  +  F+FC ++PC
Sbjct: 54  HSASFNTRFVFCCRIPC 70


>AY221634-1|AAO66457.1|  305|Caenorhabditis elegans SYM-3A protein.
          Length = 305

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 26  HSSPLSAVFIFCMQLPC 76
           HS+  +  F+FC ++PC
Sbjct: 54  HSASFNTRFVFCCRIPC 70


>U97403-7|AAB52475.2|  179|Caenorhabditis elegans Hypothetical
           protein T10E9.8 protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 76  LQPLVEYSASQELHWSMKF 132
           LQPL EYSAS E+ +++ F
Sbjct: 161 LQPLNEYSASFEVSFTIHF 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,856,139
Number of Sequences: 27780
Number of extensions: 80399
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 12,740,198
effective HSP length: 49
effective length of database: 11,378,978
effective search space used: 227579560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)