Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12m04
         (211 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   0.30 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   0.30 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   0.30 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   0.30 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   0.30 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   0.30 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   0.30 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   0.30 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   1.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   1.2  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    20   2.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   2.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    19   8.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    19   8.5  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.30
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 5   HHQTKDLHSSPLSAVFIFCMQLPC 76
           HH+T D +  P     +F   LPC
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPC 305


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.30
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 5   HHQTKDLHSSPLSAVFIFCMQLPC 76
           HH+T D +  P     +F   LPC
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPC 305


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.30
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 5   HHQTKDLHSSPLSAVFIFCMQLPC 76
           HH+T D +  P     +F   LPC
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPC 305


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.30
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 5   HHQTKDLHSSPLSAVFIFCMQLPC 76
           HH+T D +  P     +F   LPC
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPC 305


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.30
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 5   HHQTKDLHSSPLSAVFIFCMQLPC 76
           HH+T D +  P     +F   LPC
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPC 305


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.30
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 5   HHQTKDLHSSPLSAVFIFCMQLPC 76
           HH+T D +  P     +F   LPC
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPC 305


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 0.30
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 5   HHQTKDLHSSPLSAVFIFCMQLPC 76
           HH+T D +  P     +F   LPC
Sbjct: 350 HHRTPDRYVMPSWIKMLFLQWLPC 373


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 0.30
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 5   HHQTKDLHSSPLSAVFIFCMQLPC 76
           HH+T D +  P     +F   LPC
Sbjct: 350 HHRTPDRYVMPSWIKMLFLQWLPC 373


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 1.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 55  FLHAATLLQPLVEYSASQELHWSMKFT 135
           FLH  T    LV  S    + + M+FT
Sbjct: 130 FLHDVTERNKLVRLSGDGSVTYGMRFT 156



 Score = 19.0 bits (37), Expect = 6.4
 Identities = 10/44 (22%), Positives = 19/44 (43%)
 Frame = +1

Query: 7   SSNKRLAFFSIISSLHFLHAATLLQPLVEYSASQELHWSMKFTK 138
           SS  R+++   I     +    +   L+EY+A    +W  +  K
Sbjct: 293 SSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYTYWGARAKK 336


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 1.2
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = +2

Query: 5   HHQTKDLHSSPLSAVFIFCMQLPC 76
           HH+  D H        +F   LPC
Sbjct: 319 HHRNADTHEMSEWVKVVFLYWLPC 342


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 20.2 bits (40), Expect = 2.8
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +1

Query: 61  HAATLLQPLVEYSAS 105
           H   +++PL+E+SA+
Sbjct: 4   HLKNIMKPLMEFSAT 18


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.2 bits (40), Expect = 2.8
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +3

Query: 63  CSYPVTTISRIFCLSGTALVHEVYQSDFSYSQNS 164
           C +PV  +  +      ALV  +Y  + +  Q S
Sbjct: 66  CKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRS 99


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 173 KNYRKSTINQLSF 211
           K Y + T+N+L+F
Sbjct: 46  KKYFEQTLNELNF 58


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 14  TKDLHSSPLSAVF 52
           TKDL   PL+ VF
Sbjct: 139 TKDLPVPPLTEVF 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,037
Number of Sequences: 438
Number of extensions: 1083
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3039192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)