Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12m03
(805 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0105 - 786623-787091,787229-787333,787476-787864 32 0.61
12_01_0105 - 823302-823770,823902-824006,824149-824540 31 0.81
11_06_0685 - 26272928-26273110,26273186-26273257,26273339-262734... 28 10.0
11_06_0459 + 23830204-23830350,23830419-23830592,23830738-238308... 28 10.0
11_06_0276 - 21826458-21826640,21826716-21826787,21826869-218269... 28 10.0
05_06_0126 - 25834129-25834214,25834595-25834658,25836201-258365... 28 10.0
05_01_0088 + 581619-581854,581890-582035,583143-583263,583593-58... 28 10.0
>11_01_0105 - 786623-787091,787229-787333,787476-787864
Length = 320
Score = 31.9 bits (69), Expect = 0.61
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 49 DKWHTLRFKCNHRIELLIRASASSLTDQLRAMLM*QKH 162
D+WH C+HR L A SL QLRA+++ H
Sbjct: 13 DQWHPSSVCCDHRAALREIAKGQSLVTQLRAIVLPALH 50
>12_01_0105 - 823302-823770,823902-824006,824149-824540
Length = 321
Score = 31.5 bits (68), Expect = 0.81
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 49 DKWHTLRFKCNHRIELLIRASASSLTDQLRAMLM*QKH 162
D+WH C+HR L A SL QLRA+++ H
Sbjct: 13 DQWHPSSVCCDHRAALREIARGQSLVTQLRAIVLPALH 50
>11_06_0685 -
26272928-26273110,26273186-26273257,26273339-26273425,
26273566-26273655,26273741-26273785,26273872-26274054,
26274333-26274392,26274521-26274703,26274779-26274907,
26275083-26275380,26275454-26275608,26275791-26275929,
26276015-26276096,26276167-26276285,26276367-26276494,
26276640-26276813,26276882-26277028
Length = 757
Score = 27.9 bits (59), Expect = 10.0
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = -1
Query: 364 HLQGRLLKSNNLKTMFFHSTV---QL*IRQILGTSSGLQTLKLYLKPKRTKICLNRSTIA 194
H + R+LK NNLK +F+H T+ ++G SG++ ++ + K T +R +
Sbjct: 85 HDKYRVLK-NNLKILFYHDTIVKETCLYLDVIGLLSGMKPIEQRMLGKNT----SRERVC 139
Query: 193 DKRISALLLV 164
+ R LLL+
Sbjct: 140 NMREIELLLL 149
>11_06_0459 +
23830204-23830350,23830419-23830592,23830738-23830865,
23830947-23831065,23831136-23831217,23831303-23831441,
23831624-23831778,23831852-23832149,23832325-23832453,
23832529-23832711,23832840-23832899,23832973-23833101,
23833177-23833359,23833446-23833490,23833576-23833665,
23833806-23833892,23833974-23834045,23834120-23834302
Length = 800
Score = 27.9 bits (59), Expect = 10.0
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = -1
Query: 364 HLQGRLLKSNNLKTMFFHSTV---QL*IRQILGTSSGLQTLKLYLKPKRTKICLNRSTIA 194
H + R+LK NNLK +F+H T+ ++G SG++ ++ + K T +R +
Sbjct: 85 HDKYRVLK-NNLKILFYHDTIVKETCLYLDVIGLLSGMKPIEQRMLGKNT----SRERVC 139
Query: 193 DKRISALLLV 164
+ R LLL+
Sbjct: 140 NMREIELLLL 149
>11_06_0276 -
21826458-21826640,21826716-21826787,21826869-21826955,
21827096-21827185,21827271-21827315,21827402-21827584,
21827660-21827788,21827862-21827921,21828050-21828232,
21828308-21828436,21828612-21828909,21828983-21829137,
21829320-21829458,21829544-21829625,21829696-21829814,
21829896-21830023,21830169-21830342,21830411-21830557
Length = 800
Score = 27.9 bits (59), Expect = 10.0
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = -1
Query: 364 HLQGRLLKSNNLKTMFFHSTV---QL*IRQILGTSSGLQTLKLYLKPKRTKICLNRSTIA 194
H + R+LK NNLK +F+H T+ ++G SG++ ++ + K T +R +
Sbjct: 85 HDKYRVLK-NNLKILFYHDTIVKETCLYLDVIGLLSGMKPIEQRMLGKNT----SRERVC 139
Query: 193 DKRISALLLV 164
+ R LLL+
Sbjct: 140 NMREIELLLL 149
>05_06_0126 -
25834129-25834214,25834595-25834658,25836201-25836521,
25836912-25837040,25837118-25837177,25837251-25837548,
25837622-25837776,25837959-25838097,25838185-25838266,
25838337-25838455,25838537-25838664,25838810-25838983,
25839052-25839203,25839393-25839425,25840362-25841331,
25841412-25841537
Length = 1011
Score = 27.9 bits (59), Expect = 10.0
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = -1
Query: 364 HLQGRLLKSNNLKTMFFHSTV---QL*IRQILGTSSGLQTLKLYLKPKRTKICLNRSTIA 194
H + R+LK NNLK +F+H T+ ++G SG++ ++ + K T +R +
Sbjct: 463 HDKYRVLK-NNLKILFYHDTIVKETCLYLDVIGLLSGMKPIEQRMLGKNT----SRERVC 517
Query: 193 DKRISALLLV 164
+ R LLL+
Sbjct: 518 NMREIELLLL 527
>05_01_0088 +
581619-581854,581890-582035,583143-583263,583593-583773,
583842-584015,584161-584288,584370-584488,584559-584640,
584726-584864,585047-585201,585275-585572,585748-585876,
585952-586134,586263-586322,586396-586524,586600-586782,
586869-586913,586999-587088,587229-587315,587397-587468,
587813-587887
Length = 943
Score = 27.9 bits (59), Expect = 10.0
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = -1
Query: 364 HLQGRLLKSNNLKTMFFHSTV---QL*IRQILGTSSGLQTLKLYLKPKRTKICLNRSTIA 194
H + R+LK NNLK +F+H T+ ++G SG++ ++ + K T +R +
Sbjct: 264 HDKYRVLK-NNLKILFYHDTIVKETCLYLDVIGLLSGMKPIEQRMLGKNT----SRERVC 318
Query: 193 DKRISALLLV 164
+ R LLL+
Sbjct: 319 NMREIELLLL 328
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,828,648
Number of Sequences: 37544
Number of extensions: 274942
Number of successful extensions: 458
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -