Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12l23
         (288 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    24   5.0  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    24   5.0  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    23   6.7  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    23   8.8  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    23   8.8  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    23   8.8  
SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|ch...    23   8.8  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    23   8.8  
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual       23   8.8  

>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = +1

Query: 40  SIFLYLQFSFCSANVIASDNGTRPCNIKANNFNKL 144
           S +L     FC  N+   D     C+I   +  KL
Sbjct: 822 SAYLLKSIKFCDPNITPHDGDASLCDISEGSARKL 856


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 174 HFTDYKHVMLKSIIFLNYLTSVYIFNLAR 260
           HF D K  +L  I+F N    VY+  + R
Sbjct: 105 HFLDLKKPLLPQILFGNIKKDVYLDQVHR 133


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 112 CNIKANNFNKLLCNVVLS 165
           C+I+ NN + L+C++ LS
Sbjct: 734 CSIRENNLDGLVCSLPLS 751


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 269 YWISGEIKDVDAS 231
           Y+IS E KDVDA+
Sbjct: 220 YYISSEAKDVDAA 232


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 162 LSSVHFTDYKHVMLKSIIFLNYL 230
           +S VH T +KH ++ + +   YL
Sbjct: 804 MSGVHHTRFKHPLVMNPLLFRYL 826


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 281 NEEFYWISGEIKDVDAS 231
           N+E YWI+ EIK +  S
Sbjct: 345 NKESYWIAREIKRIVGS 361


>SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 202

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 213 IFLNYLTSVYIFNLA 257
           +F N L S+YIFN A
Sbjct: 131 LFTNNLVSIYIFNKA 145


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
 Frame = -2

Query: 269  YW--ISGEIKDVDASQVIQKYNRFKHHMFVISKVN 171
            YW  + G    +  S    KY RF  HMF+    N
Sbjct: 925  YWSDLGGSANHMQQSDYGFKYRRFLPHMFLEGDFN 959


>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 266 WISGEIKD-VDASQVIQKYNRFKHHMFVISKVNR 168
           W++G     V A   +QK     HH+FV+S + R
Sbjct: 36  WVTGTGDAIVIAPSGVQKERMELHHLFVMSLITR 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 929,535
Number of Sequences: 5004
Number of extensions: 13885
Number of successful extensions: 38
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)