Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12l23
(288 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0370 + 15030829-15030837,15031579-15031957,15033434-150336... 29 0.46
04_03_0381 - 15163425-15164903 28 1.4
04_03_0380 - 15150814-15152304 28 1.4
04_03_0369 + 15012906-15014417 28 1.4
04_03_0348 + 14735581-14737071 28 1.4
04_03_0347 + 14723118-14724548 28 1.4
04_03_0323 - 14364145-14365656 28 1.4
11_02_0146 + 8779249-8780130,8780815-8780970,8781070-8781265,878... 27 3.2
08_02_0607 + 19285580-19286138,19286734-19287668 27 3.2
04_03_0354 + 14830325-14830826,14831491-14832416 27 3.2
04_03_0353 - 14785648-14787213 27 3.2
02_04_0351 + 22249117-22249624,22249710-22250674 26 4.2
08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877... 25 7.4
03_01_0643 - 4708245-4708355,4708456-4708800,4709124-4709700,470... 25 7.4
03_01_0549 - 4102098-4102198,4102394-4102544,4102629-4102760,410... 25 7.4
>04_03_0370 +
15030829-15030837,15031579-15031957,15033434-15033626,
15033859-15034102,15035383-15035445
Length = 295
Score = 29.5 bits (63), Expect = 0.46
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 104 VPLSDAITFAEQKLNCKYKKIEF 36
VP+ + FAEQ+ NC+YK+ E+
Sbjct: 32 VPMLSWLFFAEQQTNCRYKQTEW 54
>04_03_0381 - 15163425-15164903
Length = 492
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 104 VPLSDAITFAEQKLNCKYKKIEF 36
VP+ FAEQ+ NC+YK+ E+
Sbjct: 392 VPMLSWPFFAEQQTNCRYKRTEW 414
>04_03_0380 - 15150814-15152304
Length = 496
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 104 VPLSDAITFAEQKLNCKYKKIEF 36
VP+ FAEQ+ NC+YK+ E+
Sbjct: 398 VPMLSWPFFAEQQTNCRYKRTEW 420
>04_03_0369 + 15012906-15014417
Length = 503
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 104 VPLSDAITFAEQKLNCKYKKIEF 36
VP+ FAEQ+ NC+YK+ E+
Sbjct: 402 VPMLSWPFFAEQQTNCRYKRTEW 424
>04_03_0348 + 14735581-14737071
Length = 496
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 104 VPLSDAITFAEQKLNCKYKKIEF 36
VP+ FAEQ+ NC+YK+ E+
Sbjct: 398 VPMLSWPFFAEQQTNCRYKRTEW 420
>04_03_0347 + 14723118-14724548
Length = 476
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 104 VPLSDAITFAEQKLNCKYKKIEF 36
VP+ FAEQ+ NC+YK+ E+
Sbjct: 376 VPMLSWPFFAEQQTNCRYKRTEW 398
>04_03_0323 - 14364145-14365656
Length = 503
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 104 VPLSDAITFAEQKLNCKYKKIEF 36
VP+ FAEQ+ NC+YK+ E+
Sbjct: 402 VPMLSWPFFAEQQTNCRYKRTEW 424
>11_02_0146 +
8779249-8780130,8780815-8780970,8781070-8781265,
8781574-8781599
Length = 419
Score = 26.6 bits (56), Expect = 3.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 251 IKDVDASQVIQKYNRFKHHMFVISK 177
I DVD+ +Q+ N+F HH+ + K
Sbjct: 64 INDVDSFYSVQQLNKFVHHLLLHRK 88
>08_02_0607 + 19285580-19286138,19286734-19287668
Length = 497
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -2
Query: 80 FAEQKLNCKYKKIEF 36
FAEQ+ NC+YK+ E+
Sbjct: 417 FAEQQTNCRYKRTEW 431
>04_03_0354 + 14830325-14830826,14831491-14832416
Length = 475
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -2
Query: 80 FAEQKLNCKYKKIEF 36
FAEQ+ NC+YK+ E+
Sbjct: 395 FAEQQTNCRYKRTEW 409
>04_03_0353 - 14785648-14787213
Length = 521
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -2
Query: 80 FAEQKLNCKYKKIEF 36
FAEQ+ NC+YK+ E+
Sbjct: 441 FAEQQTNCRYKRTEW 455
>02_04_0351 + 22249117-22249624,22249710-22250674
Length = 490
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -2
Query: 80 FAEQKLNCKYKKIEF 36
FAEQ+ NC+YK +E+
Sbjct: 405 FAEQQTNCRYKCVEW 419
>08_02_1402 -
26786011-26786128,26786263-26786516,26787505-26787732,
26788920-26789759
Length = 479
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 58 QFSFCSANVIASDNGTRPCNIKANN 132
+ SFC V+ + RPC IK ++
Sbjct: 404 EISFCDQTVVPTGADQRPCTIKIDS 428
>03_01_0643 -
4708245-4708355,4708456-4708800,4709124-4709700,
4709780-4710462,4710618-4710980,4712199-4712530,
4712856-4713048,4713748-4713790,4713964-4714052,
4714186-4714301,4714816-4714935,4715538-4715577
Length = 1003
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -2
Query: 287 KKNEEFY-WISGEIKDVDASQV 225
KKN+ F W+S E+ +VD SQ+
Sbjct: 357 KKNDSFTRWMSKELAEVDDSQI 378
>03_01_0549 -
4102098-4102198,4102394-4102544,4102629-4102760,
4102988-4103162,4103494-4103945,4104042-4104121,
4104342-4104408,4104709-4104814,4104924-4105033,
4105133-4105201,4105661-4105771,4106263-4106427,
4106639-4106725,4106974-4107027,4107101-4107240,
4107820-4107897,4108066-4108720
Length = 910
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = +1
Query: 232 LASTSLISPEIQ*NSSFF 285
++S SL++PE++ NS+FF
Sbjct: 289 ISSVSLLNPELEWNSTFF 306
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,300,788
Number of Sequences: 37544
Number of extensions: 72635
Number of successful extensions: 184
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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