Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12l23
         (288 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ459772-1|CAD30834.1| 1478|Drosophila melanogaster Fanconi anem...    29   1.3  
AE014297-2866|AAN13836.2| 1478|Drosophila melanogaster CG17269-P...    29   1.3  
AY070924-1|AAL48546.1|  665|Drosophila melanogaster RE02962p pro...    27   5.1  
AE014298-2245|AAF48524.1|  665|Drosophila melanogaster CG9020-PA...    27   5.1  
AF145630-1|AAD38605.1|  550|Drosophila melanogaster BcDNA.GH0574...    26   6.8  
AE014297-1244|AAF54592.1|  550|Drosophila melanogaster CG4757-PA...    26   6.8  
AE014296-2968|AAF49299.1|  885|Drosophila melanogaster CG14586-P...    26   6.8  
AE014296-2967|AAF49300.1|  611|Drosophila melanogaster CG14585-P...    26   6.8  
AE014134-2272|AAF53237.1| 2470|Drosophila melanogaster CG5092-PA...    26   9.0  
AE014134-1283|AAF52520.2|  452|Drosophila melanogaster CG13788-P...    26   9.0  

>AJ459772-1|CAD30834.1| 1478|Drosophila melanogaster Fanconi anemia
           complementationgroup D2 protein protein.
          Length = 1478

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 156 SALSSVHFTDYKHVMLKSIIFLNYLTSVYIFNLARNPIKL 275
           +++ +  FT +  ++L  +I +N   S+YI N+ R  IKL
Sbjct: 403 ASVPAAEFTSFDMILLLLLIHVNEDNSLYIENILRRRIKL 442


>AE014297-2866|AAN13836.2| 1478|Drosophila melanogaster CG17269-PA
           protein.
          Length = 1478

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 156 SALSSVHFTDYKHVMLKSIIFLNYLTSVYIFNLARNPIKL 275
           +++ +  FT +  ++L  +I +N   S+YI N+ R  IKL
Sbjct: 403 ASVPAAEFTSFDMILLLLLIHVNEDNSLYIENILRRRIKL 442


>AY070924-1|AAL48546.1|  665|Drosophila melanogaster RE02962p
           protein.
          Length = 665

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 260 SGEIKDVDASQVIQKYNRFKHHMFVISKVNRREST 156
           SGE  DVD  Q+  +  + K+ +F++ K    EST
Sbjct: 30  SGEQLDVDLVQLQIENKKLKNRLFILKKSIAEEST 64


>AE014298-2245|AAF48524.1|  665|Drosophila melanogaster CG9020-PA
           protein.
          Length = 665

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 260 SGEIKDVDASQVIQKYNRFKHHMFVISKVNRREST 156
           SGE  DVD  Q+  +  + K+ +F++ K    EST
Sbjct: 30  SGEQLDVDLVQLQIENKKLKNRLFILKKSIAEEST 64


>AF145630-1|AAD38605.1|  550|Drosophila melanogaster BcDNA.GH05741
           protein.
          Length = 550

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 275 EFYWISGEIKDVDASQVIQKYNRFKHHMFVISKVNRREST 156
           EF ++SG   D+    ++ +YNR   H   I+ +  + ST
Sbjct: 330 EFEFLSGAFFDLRNESIVNRYNRDWEHYASIALLLEQNST 369


>AE014297-1244|AAF54592.1|  550|Drosophila melanogaster CG4757-PA
           protein.
          Length = 550

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 275 EFYWISGEIKDVDASQVIQKYNRFKHHMFVISKVNRREST 156
           EF ++SG   D+    ++ +YNR   H   I+ +  + ST
Sbjct: 330 EFEFLSGAFFDLRNESIVNRYNRDWEHYASIALLLEQNST 369


>AE014296-2968|AAF49299.1|  885|Drosophila melanogaster CG14586-PA
           protein.
          Length = 885

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 195 VMLKSIIFLNYLTSVYIFNLARNPIK 272
           VML S +  NY TS+ +  L  +P++
Sbjct: 296 VMLTSFLMYNYYTSIVVSTLLGSPVR 321


>AE014296-2967|AAF49300.1|  611|Drosophila melanogaster CG14585-PA
           protein.
          Length = 611

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 186 YKHVMLKSIIFLNYLTSVYIFNLARNPIK 272
           Y  + L S I  NY TSV + +L  +P+K
Sbjct: 404 YFALFLISFIMYNYYTSVVVSSLLSSPVK 432


>AE014134-2272|AAF53237.1| 2470|Drosophila melanogaster CG5092-PA
           protein.
          Length = 2470

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 6/29 (20%), Positives = 19/29 (65%)
 Frame = -2

Query: 269 YWISGEIKDVDASQVIQKYNRFKHHMFVI 183
           +++  E++++   ++ Q ++ F HH+F +
Sbjct: 31  FYVKTELREMSQEELAQFFDEFDHHIFTM 59


>AE014134-1283|AAF52520.2|  452|Drosophila melanogaster CG13788-PA,
           isoform A protein.
          Length = 452

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 4   N*IQNIWYN*LNSIFLYLQFSFC 72
           N ++  WY  LN+IF +L  ++C
Sbjct: 54  NSLEQSWYGFLNAIFRWLLLAYC 76


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,354,919
Number of Sequences: 53049
Number of extensions: 132172
Number of successful extensions: 317
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 24,988,368
effective HSP length: 72
effective length of database: 21,168,840
effective search space used: 486883320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)