Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12l23
         (288 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical pr...    28   0.93 
U39993-3|AAK72060.1|  728|Caenorhabditis elegans Hypothetical pr...    27   2.2  
U41279-2|AAK31425.2|  145|Caenorhabditis elegans Hypothetical pr...    27   2.9  
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t...    25   6.6  
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t...    25   6.6  
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t...    25   6.6  
Z81477-1|CAB03931.1|  271|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr...    25   8.7  
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    25   8.7  

>Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical
           protein T25E12.11 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = +3

Query: 210 IIFLNYLTSVYIFNLARNPIKLFVFL 287
           I+F+ ++TS++IF++ +  I L +FL
Sbjct: 98  IMFIFFMTSIFIFHILQQTIHLLLFL 123


>U39993-3|AAK72060.1|  728|Caenorhabditis elegans Hypothetical
           protein F47E1.4 protein.
          Length = 728

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 153 CSALSSVHFTDYKHVMLKSIIFLNYLTSVYIFNLARN 263
           CS   S H   + H++   + F++ L+ +Y++  A N
Sbjct: 671 CSIYDSDHLRIWMHLLYVGVRFISLLSDIYVWKNAGN 707


>U41279-2|AAK31425.2|  145|Caenorhabditis elegans Hypothetical
           protein C17C3.9 protein.
          Length = 145

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 79  NVIASDNGTRPCNIKANNFNKLLCNVV 159
           + I  +  T PC IK  N  + LCNVV
Sbjct: 84  STIPDEYRTHPCVIKFQNCIRALCNVV 110


>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 2 protein.
          Length = 1785

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 204 KSIIFLNYLTSVYIFNLARNPIKLFV 281
           +  IFL ++ S+  F L +N IKL +
Sbjct: 188 RPFIFLRFIRSIVRFKLPKNRIKLII 213


>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1763

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 204 KSIIFLNYLTSVYIFNLARNPIKLFV 281
           +  IFL ++ S+  F L +N IKL +
Sbjct: 166 RPFIFLRFIRSIVRFKLPKNRIKLII 191


>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1785

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 204 KSIIFLNYLTSVYIFNLARNPIKLFV 281
           +  IFL ++ S+  F L +N IKL +
Sbjct: 188 RPFIFLRFIRSIVRFKLPKNRIKLII 213


>Z81477-1|CAB03931.1|  271|Caenorhabditis elegans Hypothetical
           protein C27C7.1 protein.
          Length = 271

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 91  SDNGTRPCNIKANNFNKLLCNVVLSLRFT 177
           S  G R   +K +NF KLL N++   + T
Sbjct: 101 SSQGARRSQLKLSNFPKLLANLMQDTKAT 129


>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
           protein C30G12.6a protein.
          Length = 1100

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 55  LQFSFCSANVIASDNGTRPCNIKANNFNKLLCNVVLSL 168
           L   FC A  I S  G    NIK     +L+C  + S+
Sbjct: 857 LLLGFCRAVGIISKTGEDDSNIKLLEMTELVCECISSV 894


>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
           protein C30G12.6b protein.
          Length = 1097

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 55  LQFSFCSANVIASDNGTRPCNIKANNFNKLLCNVVLSL 168
           L   FC A  I S  G    NIK     +L+C  + S+
Sbjct: 857 LLLGFCRAVGIISKTGEDDSNIKLLEMTELVCECISSV 894


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of
           efl-1 mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 174 HFTDYKHVMLKSIIFL 221
           H+ D KH MLKSII +
Sbjct: 739 HYPDLKHDMLKSIIVI 754


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,133,335
Number of Sequences: 27780
Number of extensions: 79229
Number of successful extensions: 180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)