Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12l23
         (288 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   3.0  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   3.0  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   3.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   3.0  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 115 NIKANNFNKLLCNVVLSLRFTL 180
           N   NN+ KL CN    L + +
Sbjct: 90  NYNNNNYKKLYCNNYKKLYYNI 111


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 115 NIKANNFNKLLCNVVLSLRFTL 180
           N   NN+ KL CN    L + +
Sbjct: 90  NYNNNNYKKLYCNNYKKLYYNI 111


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 115 NIKANNFNKLLCNVVLSLRFTL 180
           N   NN+ KL CN    L + +
Sbjct: 90  NYNNNNYKKLYCNNYRKLYYNI 111


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 124 ANNFNKLLCNVVLSLRFTLL 183
           A +  KLLCNV     + LL
Sbjct: 102 ARSLEKLLCNVEAEENYNLL 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,146
Number of Sequences: 438
Number of extensions: 962
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5744526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)