Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12l17
         (386 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0958 + 33073302-33073442,33073839-33073913,33074382-330744...    32   0.18 
05_06_0274 - 26860573-26860783,26861125-26861202,26861671-26863157     27   3.9  
04_04_1057 - 30451759-30452523,30452627-30452701,30453180-304532...    27   6.9  
06_03_0711 + 23798998-23799106,23799838-23799957,23800181-238003...    26   9.1  

>02_05_0958 +
           33073302-33073442,33073839-33073913,33074382-33074497,
           33076863-33076977,33077100-33077228,33078907-33078954,
           33079343-33079469,33079634-33079789,33080031-33080287,
           33080431-33080580,33080660-33080714,33080793-33081088,
           33081252-33081335,33081869-33081941,33082164-33082291,
           33082905-33083090,33083179-33083316,33083394-33083519,
           33083705-33083965
          Length = 886

 Score = 31.9 bits (69), Expect = 0.18
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -1

Query: 278 PYYRLGNHEK-VEYIPLKLALNDDITSEP-QQFSEPVYKMPIDDMMVGYNNTTSNV 117
           P Y    H+K +E IP+     DD   EP    +EP  + P+D+ ++  N    +V
Sbjct: 746 PAYNAKLHQKSLEVIPVGFIFEDDTLVEPANSLAEPQLQQPLDNGLIDVNQLLESV 801


>05_06_0274 - 26860573-26860783,26861125-26861202,26861671-26863157
          Length = 591

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 207 DIIVERQFQRDVFHLFVVAQPIVWHVQI 290
           D  V+ Q ++D++  F  + PIV HV +
Sbjct: 403 DTFVDEQLRQDIYLDFTTSDPIVLHVDV 430


>04_04_1057 -
           30451759-30452523,30452627-30452701,30453180-30453254,
           30453503-30453591,30454058-30454157,30454244-30454388,
           30454609-30454658,30455033-30455114,30455200-30455282,
           30455360-30455429,30455523-30455632,30455719-30455872,
           30456639-30456796,30457338-30457517
          Length = 711

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 203 SEPQQFSEPVYKMPIDDMMVGYNNTTSNVSAGI 105
           + P QF+ P Y+M I     G + + S  S GI
Sbjct: 557 ASPSQFTPPNYQMQIPSNSTGMHGSGSPASGGI 589


>06_03_0711 +
           23798998-23799106,23799838-23799957,23800181-23800317,
           23800418-23800579,23800707-23800793,23800872-23800958,
           23801317-23801454,23802023-23802214,23802287-23802385,
           23802490-23802564
          Length = 401

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 315 RNLCNKSGLALMRRNLKYLLHLRF 386
           RN+C ++G+A +R    Y++H  F
Sbjct: 352 RNVCTEAGMAAIRAERDYVIHEDF 375


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,102,609
Number of Sequences: 37544
Number of extensions: 147577
Number of successful extensions: 317
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)