Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12l15
         (820 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0395 + 2869748-2870045,2870450-2870571,2871700-2871777,287...    30   2.5  
10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593     29   4.4  
10_08_0330 - 16816497-16819952                                         29   5.9  
10_01_0003 + 46158-46428,46588-46706,46819-46928,48977-49415,495...    28   7.8  
03_05_0704 - 26953474-26953643,26953770-26953801,26953915-269540...    28   7.8  

>02_01_0395 +
           2869748-2870045,2870450-2870571,2871700-2871777,
           2871886-2872470,2872917-2873657,2873794-2873868
          Length = 632

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 160 YVPNGGIVFKVVCKCSALLLPWRSRCVFKMAL 255
           Y+PNG +  ++ C+     LPW+ R  FKMA+
Sbjct: 390 YMPNGSLEDRLFCRSGTPPLPWQLR--FKMAV 419


>10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593
          Length = 1278

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 283 NTNMPHNRLPVSINLLNSMQYL 348
           NTN  H  LP +I  L S+QYL
Sbjct: 486 NTNSLHGELPATITALRSLQYL 507


>10_08_0330 - 16816497-16819952
          Length = 1151

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 283 NTNMPHNRLPVSINLLNSMQYL 348
           NTN+ H  LP +I  L ++QYL
Sbjct: 481 NTNILHGELPATITALKNLQYL 502


>10_01_0003 +
           46158-46428,46588-46706,46819-46928,48977-49415,
           49511-49633,49805-50106,50143-50350,50729-51448
          Length = 763

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 160 YVPNGGIVFKVVCKCSALLLPWRSR 234
           YVPNG +  ++  KC    LPW+ R
Sbjct: 553 YVPNGSLHDRLWSKCGIPQLPWKIR 577


>03_05_0704 -
           26953474-26953643,26953770-26953801,26953915-26954009,
           26954107-26954180,26954283-26954412,26954522-26954585,
           26954660-26954722,26954795-26954937,26955386-26955523,
           26955610-26955731,26955805-26955976,26956559-26956630,
           26956753-26956887,26956987-26957103,26957184-26957316,
           26957455-26957561,26958060-26958077,26958235-26958379,
           26958472-26958671,26960744-26961421
          Length = 935

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 719 YKVTGLPL*PLN*LKFRNDGTTFFTV-LFKLKNTY 820
           YK+TG+P  P+N L F  DG     V  FK +  Y
Sbjct: 369 YKITGIPSAPMNELMFDLDGNRISVVQYFKKQYNY 403


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,298,960
Number of Sequences: 37544
Number of extensions: 357147
Number of successful extensions: 652
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)