Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12l15
         (820 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119475-1|AAM50129.1| 1470|Drosophila melanogaster GH05619p pro...    33   0.62 
AE014297-2096|AAF55237.2| 1470|Drosophila melanogaster CG31150-P...    33   0.62 
BT022325-1|AAY54741.1|  131|Drosophila melanogaster IP04544p pro...    29   7.6  
AE014297-2857|AAF55804.1|  136|Drosophila melanogaster CG15690-P...    29   7.6  

>AY119475-1|AAM50129.1| 1470|Drosophila melanogaster GH05619p protein.
          Length = 1470

 Score = 32.7 bits (71), Expect = 0.62
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -1

Query: 118  LLFGSAVSESCDYIFRSVSTF*CFLLNLLWISI*PDC 8
            L F S +  SC  I   V+TF  +L+NL  I++ PDC
Sbjct: 1267 LTFDSGLKRSCSVINGIVNTFDDYLINLREIAVRPDC 1303


>AE014297-2096|AAF55237.2| 1470|Drosophila melanogaster CG31150-PA
            protein.
          Length = 1470

 Score = 32.7 bits (71), Expect = 0.62
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -1

Query: 118  LLFGSAVSESCDYIFRSVSTF*CFLLNLLWISI*PDC 8
            L F S +  SC  I   V+TF  +L+NL  I++ PDC
Sbjct: 1267 LTFDSGLKRSCSVINGIVNTFDDYLINLREIAVRPDC 1303


>BT022325-1|AAY54741.1|  131|Drosophila melanogaster IP04544p
           protein.
          Length = 131

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 23/92 (25%), Positives = 36/92 (39%)
 Frame = +2

Query: 542 HHKAHNEEHSRLSAVH*H*NKINVHLQLLNHRIH*RKSEAVYKIITDSHFMTATVPGSLY 721
           HH+ H+     L   H H +   +H Q  +H +H     A      D H  T    G L+
Sbjct: 42  HHRQHSLHQQHLQRQHSHTSLTKIHRQSSSHSVHGGGGRA------DHHRTTTGATGRLF 95

Query: 722 KVTGLPL*PLN*LKFRNDGTTFFTVLFKLKNT 817
              G         + +   T+FF + F+ K+T
Sbjct: 96  SYFGNE----QDHERKKSETSFFNLGFRRKST 123


>AE014297-2857|AAF55804.1|  136|Drosophila melanogaster CG15690-PA
           protein.
          Length = 136

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 23/92 (25%), Positives = 36/92 (39%)
 Frame = +2

Query: 542 HHKAHNEEHSRLSAVH*H*NKINVHLQLLNHRIH*RKSEAVYKIITDSHFMTATVPGSLY 721
           HH+ H+     L   H H +   +H Q  +H +H     A      D H  T    G L+
Sbjct: 47  HHRQHSLHQQHLQRQHSHTSLTKIHRQSSSHSVHGGGGRA------DHHRTTTGATGRLF 100

Query: 722 KVTGLPL*PLN*LKFRNDGTTFFTVLFKLKNT 817
              G         + +   T+FF + F+ K+T
Sbjct: 101 SYFGNE----QDHERKKSETSFFNLGFRRKST 128


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,852,334
Number of Sequences: 53049
Number of extensions: 670968
Number of successful extensions: 1442
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1439
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3860063376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)