Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12l15
         (820 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine re...    28   7.0  
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr...    28   9.2  
AF067944-5|AAC17673.1|  335|Caenorhabditis elegans Seven tm rece...    28   9.2  

>AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 33 protein.
          Length = 296

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = -3

Query: 671 FYTLPR--IFFNEFYDSIIASVRLFCFNVNGLPT--ISNVLRYELYD 543
           F+T+ +  IFF+    SI+ S++LF +N NG  +  IS   R  L D
Sbjct: 172 FWTIHKSIIFFSILVFSILISIKLFIWNTNGQSSNQISKANRLALLD 218


>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical
           protein W05B2.4 protein.
          Length = 2265

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +1

Query: 52  IKRLKQIEKYNHKTH*PHYQIVIIS*MSNIRLEIRLYVPN-GGIVFKV 192
           + RL +IEKY+H  H  + + +++   S   ++IR++  N  G++F+V
Sbjct: 163 LARLNKIEKYHH--HVKNNREILLRSQSLAAMKIRIFFENRKGLIFEV 208


>AF067944-5|AAC17673.1|  335|Caenorhabditis elegans Seven tm
           receptor protein 67 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = +1

Query: 4   FHNLVKLISTVSLIRNIKRLKQIEKYNHKTH*PHYQIVIIS*MSNIRLEIRLYVPNGGIV 183
           F   + + + V + RN+K  K+++K++ +     YQ  +   M  I   I L +P G I+
Sbjct: 208 FSYCIIIFTCVQMHRNMK--KELKKFSTQNQKLEYQFFLALVMQTIGPTIFLIIPTGPIL 265

Query: 184 F-KVVCKCSALLLPWRSRCVFKMALFH 261
              ++     L + W++  ++ +  F+
Sbjct: 266 MTPLIAPIFELEVNWQTGNLYSLVGFY 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,985,605
Number of Sequences: 27780
Number of extensions: 364801
Number of successful extensions: 804
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)