Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12l11
         (202 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...    32   0.009
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    32   0.009
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    23   5.5  
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    22   9.7  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 32.3 bits (70), Expect = 0.009
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 172 TKGTSXFGXXXXXXXXXXXRCGRSSYHXXKSKCA 71
           TKGT  FG           RCG+ S+H  KS CA
Sbjct: 2   TKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCA 35



 Score = 32.3 bits (70), Expect = 0.009
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -2

Query: 66 CGYXAAKLRSYHWSVKA 16
          CGY AAK RSY+W  KA
Sbjct: 37 CGYPAAKTRSYNWGAKA 53


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 32.3 bits (70), Expect = 0.009
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 172 TKGTSXFGXXXXXXXXXXXRCGRSSYHXXKSKCA 71
           TKGT  FG           RCG+ S+H  KS CA
Sbjct: 2   TKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCA 35



 Score = 32.3 bits (70), Expect = 0.009
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -2

Query: 66 CGYXAAKLRSYHWSVKA 16
          CGY AAK RSY+W  KA
Sbjct: 37 CGYPAAKTRSYNWGAKA 53


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 46   FCCXISTYGRILIXEXDMTIYH 111
            +CC ++  G+IL+ +    IY+
Sbjct: 2406 YCCVVNVNGKILVKDKLSRIYN 2427


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 64  WISCSKITIXP 32
           W+ C K+TI P
Sbjct: 287 WLECDKVTIQP 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 520,355
Number of Sequences: 5004
Number of extensions: 4940
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)