Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12l11
         (202 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161...    34   0.018
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378...    34   0.018
02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63...    34   0.018

>08_01_0195 +
           1612938-1613003,1613026-1613161,1614624-1614725,
           1614833-1614876
          Length = 115

 Score = 33.9 bits (74), Expect = 0.018
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -2

Query: 66  CGYXAAKLRSYHWSVKA 16
           CGY AA++R Y+WSVKA
Sbjct: 58  CGYPAARIRKYNWSVKA 74



 Score = 30.7 bits (66), Expect = 0.17
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 169 KGTSXFGXXXXXXXXXXXRCGRSSYHXXKSKCAHMWISCSKI 44
           KGT  FG           RCGR S+H  KS C+      ++I
Sbjct: 24  KGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARI 65


>02_05_1204 +
          34936696-34936698,34936809-34936944,34937794-34937895,
          34938153-34938199
          Length = 95

 Score = 33.9 bits (74), Expect = 0.018
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -2

Query: 66 CGYXAAKLRSYHWSVKA 16
          CGY AA++R Y+WSVKA
Sbjct: 37 CGYPAARIRKYNWSVKA 53



 Score = 30.7 bits (66), Expect = 0.17
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 169 KGTSXFGXXXXXXXXXXXRCGRSSYHXXKSKCAHMWISCSKI 44
           KGT  FG           RCGR S+H  KS C+      ++I
Sbjct: 3   KGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARI 44


>02_01_0089 +
          633642-633644,633728-633863,635356-635457,635565-635608
          Length = 94

 Score = 33.9 bits (74), Expect = 0.018
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -2

Query: 66 CGYXAAKLRSYHWSVKA 16
          CGY AA++R Y+WSVKA
Sbjct: 37 CGYPAARIRKYNWSVKA 53



 Score = 30.7 bits (66), Expect = 0.17
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 169 KGTSXFGXXXXXXXXXXXRCGRSSYHXXKSKCAHMWISCSKI 44
           KGT  FG           RCGR S+H  KS C+      ++I
Sbjct: 3   KGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARI 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,378,756
Number of Sequences: 37544
Number of extensions: 32223
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 14,793,348
effective HSP length: 46
effective length of database: 13,066,324
effective search space used: 261326480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)