Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12l11
         (202 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S79979-1|AAB47039.2|   97|Homo sapiens ribosomal protein L37 pro...    32   0.39 
L11567-1|AAA62148.1|   97|Homo sapiens ribosomal protein L37 pro...    32   0.39 
D23661-1|BAA04888.1|   97|Homo sapiens ribosomal protein L37 pro...    32   0.39 
CR456890-1|CAG33171.1|   97|Homo sapiens RPL37 protein.                32   0.39 
BC084576-1|AAH84576.1|   97|Homo sapiens RPL37 protein protein.        32   0.39 
BC079477-1|AAH79477.1|   97|Homo sapiens ribosomal protein L37 p...    32   0.39 
AB061834-1|BAB79472.1|   97|Homo sapiens ribosomal protein L37 p...    32   0.39 

>S79979-1|AAB47039.2|   97|Homo sapiens ribosomal protein L37
           protein.
          Length = 97

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -1

Query: 172 TKGTSXFGXXXXXXXXXXXRCGRSSYHXXKSKC 74
           TKGTS FG           RCG  +YH  KS C
Sbjct: 2   TKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTC 34



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 66 CGYXAAKLRSYHWSVKA 16
          CGY A + R Y+WS KA
Sbjct: 37 CGYPAKRKRKYNWSAKA 53


>L11567-1|AAA62148.1|   97|Homo sapiens ribosomal protein L37
           protein.
          Length = 97

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -1

Query: 172 TKGTSXFGXXXXXXXXXXXRCGRSSYHXXKSKC 74
           TKGTS FG           RCG  +YH  KS C
Sbjct: 2   TKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTC 34



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 66 CGYXAAKLRSYHWSVKA 16
          CGY A + R Y+WS KA
Sbjct: 37 CGYPAKRKRKYNWSAKA 53


>D23661-1|BAA04888.1|   97|Homo sapiens ribosomal protein L37
           protein.
          Length = 97

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -1

Query: 172 TKGTSXFGXXXXXXXXXXXRCGRSSYHXXKSKC 74
           TKGTS FG           RCG  +YH  KS C
Sbjct: 2   TKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTC 34



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 66 CGYXAAKLRSYHWSVKA 16
          CGY A + R Y+WS KA
Sbjct: 37 CGYPAKRKRKYNWSAKA 53


>CR456890-1|CAG33171.1|   97|Homo sapiens RPL37 protein.
          Length = 97

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -1

Query: 172 TKGTSXFGXXXXXXXXXXXRCGRSSYHXXKSKC 74
           TKGTS FG           RCG  +YH  KS C
Sbjct: 2   TKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTC 34



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 66 CGYXAAKLRSYHWSVKA 16
          CGY A + R Y+WS KA
Sbjct: 37 CGYPAKRKRKYNWSAKA 53


>BC084576-1|AAH84576.1|   97|Homo sapiens RPL37 protein protein.
          Length = 97

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -1

Query: 172 TKGTSXFGXXXXXXXXXXXRCGRSSYHXXKSKC 74
           TKGTS FG           RCG  +YH  KS C
Sbjct: 2   TKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTC 34



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 66 CGYXAAKLRSYHWSVKA 16
          CGY A + R Y+WS KA
Sbjct: 37 CGYPAKRKRKYNWSAKA 53


>BC079477-1|AAH79477.1|   97|Homo sapiens ribosomal protein L37
           protein.
          Length = 97

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -1

Query: 172 TKGTSXFGXXXXXXXXXXXRCGRSSYHXXKSKC 74
           TKGTS FG           RCG  +YH  KS C
Sbjct: 2   TKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTC 34



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 66 CGYXAAKLRSYHWSVKA 16
          CGY A + R Y+WS KA
Sbjct: 37 CGYPAKRKRKYNWSAKA 53


>AB061834-1|BAB79472.1|   97|Homo sapiens ribosomal protein L37
           protein.
          Length = 97

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -1

Query: 172 TKGTSXFGXXXXXXXXXXXRCGRSSYHXXKSKC 74
           TKGTS FG           RCG  +YH  KS C
Sbjct: 2   TKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTC 34



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 66 CGYXAAKLRSYHWSVKA 16
          CGY A + R Y+WS KA
Sbjct: 37 CGYPAKRKRKYNWSAKA 53


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,489,249
Number of Sequences: 237096
Number of extensions: 162112
Number of successful extensions: 274
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 76,859,062
effective HSP length: 45
effective length of database: 66,189,742
effective search space used: 1389984582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)