Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12l11
         (202 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-2108|AAF48428.1|   93|Drosophila melanogaster CG9091-PA...    40   5e-04
BT023213-1|AAY55629.1|   89|Drosophila melanogaster IP02962p pro...    37   0.003
AE013599-3544|AAF46957.1|   89|Drosophila melanogaster CG9873-PA...    37   0.003
BT023224-1|AAY55640.1|  103|Drosophila melanogaster IP02862p pro...    37   0.004
BT023192-1|AAY55608.1|   78|Drosophila melanogaster IP03162p pro...    32   0.096

>AE014298-2108|AAF48428.1|   93|Drosophila melanogaster CG9091-PA
           protein.
          Length = 93

 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 20/43 (46%), Positives = 22/43 (51%)
 Frame = -1

Query: 172 TKGTSXFGXXXXXXXXXXXRCGRSSYHXXKSKCAHMWISCSKI 44
           TKGTS FG           RCGRSSYH  KS CA      +K+
Sbjct: 2   TKGTSSFGKRHNKTHTLCRRCGRSSYHIQKSTCAQCGYPAAKL 44



 Score = 37.5 bits (83), Expect = 0.003
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -2

Query: 66 CGYXAAKLRSYHWSVKA 16
          CGY AAKLRSY+WSVKA
Sbjct: 37 CGYPAAKLRSYNWSVKA 53


>BT023213-1|AAY55629.1|   89|Drosophila melanogaster IP02962p
           protein.
          Length = 89

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = -1

Query: 172 TKGTSXFGXXXXXXXXXXXRCGRSSYHXXKSKCAHMWISCSK 47
           TKGT+ FG           RCG SSYH  KSKC+      +K
Sbjct: 2   TKGTTSFGKRHNKTHTICRRCGNSSYHLQKSKCSQSGYPAAK 43



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 63 GYXAAKLRSYHWSVKA 16
          GY AAK RS++WS KA
Sbjct: 38 GYPAAKTRSFNWSRKA 53


>AE013599-3544|AAF46957.1|   89|Drosophila melanogaster CG9873-PA
           protein.
          Length = 89

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = -1

Query: 172 TKGTSXFGXXXXXXXXXXXRCGRSSYHXXKSKCAHMWISCSK 47
           TKGT+ FG           RCG SSYH  KSKC+      +K
Sbjct: 2   TKGTTSFGKRHNKTHTICRRCGNSSYHLQKSKCSQCGYPAAK 43



 Score = 31.1 bits (67), Expect = 0.22
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -2

Query: 66 CGYXAAKLRSYHWSVKA 16
          CGY AAK RS++WS KA
Sbjct: 37 CGYPAAKTRSFNWSRKA 53


>BT023224-1|AAY55640.1|  103|Drosophila melanogaster IP02862p
           protein.
          Length = 103

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = -1

Query: 172 TKGTSXFGXXXXXXXXXXXRCGRSSYHXXKSKCA 71
           TKGT+ FG           RCG SSYH  KSKC+
Sbjct: 2   TKGTTSFGKRHNKTHTICRRCGNSSYHLQKSKCS 35


>BT023192-1|AAY55608.1|   78|Drosophila melanogaster IP03162p
           protein.
          Length = 78

 Score = 32.3 bits (70), Expect = 0.096
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = -1

Query: 172 TKGTSXFGXXXXXXXXXXXRCGRSSYHXXKSKCAHMWISCSKITIXPLVSEG 17
           TKGT+ FG           RCG SSYH  +++ A   +SC +     LV +G
Sbjct: 2   TKGTTSFGKRHNKTHTICRRCGNSSYH-RRNRSAPSRLSCGQDPKLQLVPKG 52


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,551,236
Number of Sequences: 53049
Number of extensions: 52498
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 24,988,368
effective HSP length: 46
effective length of database: 22,548,114
effective search space used: 450962280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)