Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12l11
         (202 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical pr...    34   0.016
Z77131-1|CAB00854.1|   91|Caenorhabditis elegans Hypothetical pr...    34   0.016

>Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical
           protein W01D2.1 protein.
          Length = 92

 Score = 33.9 bits (74), Expect = 0.016
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 172 TKGTSXFGXXXXXXXXXXXRCGRSSYHXXKSKCA 71
           TKGT  FG           RCG+SS+H  K +CA
Sbjct: 2   TKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCA 35



 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 66 CGYXAAKLRSYHWSVKA 16
          CGY  AK R+Y+W  K+
Sbjct: 37 CGYPDAKKRTYNWGAKS 53


>Z77131-1|CAB00854.1|   91|Caenorhabditis elegans Hypothetical
           protein C54C6.1 protein.
          Length = 91

 Score = 33.9 bits (74), Expect = 0.016
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 172 TKGTSXFGXXXXXXXXXXXRCGRSSYHXXKSKCA 71
           TKGT  FG           RCG+SS+H  K +CA
Sbjct: 2   TKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCA 35



 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 66 CGYXAAKLRSYHWSVKA 16
          CGY  AK R+Y+W  K+
Sbjct: 37 CGYQDAKKRTYNWGAKS 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,864,807
Number of Sequences: 27780
Number of extensions: 27575
Number of successful extensions: 44
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 12,740,198
effective HSP length: 46
effective length of database: 11,462,318
effective search space used: 229246360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)