Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12l11
         (202 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    20   2.4  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    19   7.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     18   9.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    18   9.8  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
          protein 8 protein.
          Length = 416

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 23 TDQWXDRNF 49
          TDQW D+ F
Sbjct: 67 TDQWGDKTF 75


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/15 (40%), Positives = 7/15 (46%)
 Frame = -1

Query: 103 SSYHXXKSKCAHMWI 59
           S Y     KC  +WI
Sbjct: 122 SVYRMQVDKCGRLWI 136


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -1

Query: 67  MWISCS 50
           MW+SCS
Sbjct: 415 MWLSCS 420


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 27  TSGXIVILLXDIHIWAHFD 83
           T+G I IL+   HI+ + D
Sbjct: 491 TAGTIGILMDAPHIFEYVD 509


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,132
Number of Sequences: 438
Number of extensions: 364
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2659293
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)