Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12l10
(846 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82077-9|CAB04941.1| 259|Caenorhabditis elegans Hypothetical pr... 361 e-100
AL032650-2|CAA21705.1| 259|Caenorhabditis elegans Hypothetical ... 361 e-100
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical... 33 0.34
Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical p... 31 1.0
AL031629-3|CAA20976.1| 555|Caenorhabditis elegans Hypothetical ... 31 1.0
Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical pr... 31 1.4
AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical... 31 1.4
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ... 31 1.4
Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr... 30 2.4
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ... 30 2.4
AC024758-3|AAF59456.3| 1037|Caenorhabditis elegans Hypothetical ... 30 2.4
U80032-5|AAB53878.1| 552|Caenorhabditis elegans Hypothetical pr... 29 3.1
U40799-1|AAA81479.1| 250|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe... 29 3.1
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z82078-9|CAE11308.1| 949|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z35663-6|CAD82917.1| 606|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z35663-5|CAA84727.1| 681|Caenorhabditis elegans Hypothetical pr... 29 4.2
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p... 29 4.2
U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass... 29 4.2
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr... 29 4.2
AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode poly... 29 4.2
AL023844-13|CAE11312.1| 949|Caenorhabditis elegans Hypothetical... 29 4.2
AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode poly... 29 4.2
AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode poly... 29 4.2
U80030-10|AAG24167.2| 378|Caenorhabditis elegans Serpentine rec... 29 5.5
U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical p... 29 5.5
U00049-3|AAC47059.1| 339|Caenorhabditis elegans Serpentine rece... 29 5.5
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 28 7.3
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 28 7.3
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 28 7.3
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 28 7.3
U70854-5|AAB09157.1| 589|Caenorhabditis elegans Dnaj domain (pr... 28 7.3
U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical pr... 28 7.3
AF025453-10|AAK31402.3| 487|Caenorhabditis elegans Hypothetical... 28 7.3
Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical pr... 28 9.6
Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical p... 28 9.6
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 28 9.6
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 28 9.6
>Z82077-9|CAB04941.1| 259|Caenorhabditis elegans Hypothetical
protein W09C5.1 protein.
Length = 259
Score = 361 bits (888), Expect = e-100
Identities = 165/227 (72%), Positives = 200/227 (88%)
Frame = -3
Query: 841 HKRAEKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDR 662
H R++ A+ LRG KAK+++K+R +EK++M+K +K HEEK+ K+ E+ +GA+P YLLDR
Sbjct: 33 HDRSQMAKTLRGHKAKLYHKKRYSEKVEMRKLLKQHEEKDQKNTVEQPDKGAVPAYLLDR 92
Query: 661 DVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKV 482
Q+ VLSNMIKQKRK+KAGK++VPIP+VRA +DAE FKV+K+GK+ RK WKRMVTKV
Sbjct: 93 QQQTSGTVLSNMIKQKRKQKAGKFNVPIPQVRAVSDAEAFKVVKTGKTNRKGWKRMVTKV 152
Query: 481 TFVGENFTRKPPKFERFIRPMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGV 302
TFVGE+FTRKP KFERFIRPM LRFKKAHVTHPEL+ TF LPI+GVKKNPSSQMYTSLGV
Sbjct: 153 TFVGESFTRKPAKFERFIRPMGLRFKKAHVTHPELQTTFHLPIVGVKKNPSSQMYTSLGV 212
Query: 301 ITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLLV 161
ITKGT++EVN+SELG+VTQ GKVVWGK+AQVTNNPENDGCINAVLL+
Sbjct: 213 ITKGTILEVNVSELGMVTQGGKVVWGKFAQVTNNPENDGCINAVLLI 259
>AL032650-2|CAA21705.1| 259|Caenorhabditis elegans Hypothetical
protein W09C5.1 protein.
Length = 259
Score = 361 bits (888), Expect = e-100
Identities = 165/227 (72%), Positives = 200/227 (88%)
Frame = -3
Query: 841 HKRAEKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDR 662
H R++ A+ LRG KAK+++K+R +EK++M+K +K HEEK+ K+ E+ +GA+P YLLDR
Sbjct: 33 HDRSQMAKTLRGHKAKLYHKKRYSEKVEMRKLLKQHEEKDQKNTVEQPDKGAVPAYLLDR 92
Query: 661 DVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKV 482
Q+ VLSNMIKQKRK+KAGK++VPIP+VRA +DAE FKV+K+GK+ RK WKRMVTKV
Sbjct: 93 QQQTSGTVLSNMIKQKRKQKAGKFNVPIPQVRAVSDAEAFKVVKTGKTNRKGWKRMVTKV 152
Query: 481 TFVGENFTRKPPKFERFIRPMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGV 302
TFVGE+FTRKP KFERFIRPM LRFKKAHVTHPEL+ TF LPI+GVKKNPSSQMYTSLGV
Sbjct: 153 TFVGESFTRKPAKFERFIRPMGLRFKKAHVTHPELQTTFHLPIVGVKKNPSSQMYTSLGV 212
Query: 301 ITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLLV 161
ITKGT++EVN+SELG+VTQ GKVVWGK+AQVTNNPENDGCINAVLL+
Sbjct: 213 ITKGTILEVNVSELGMVTQGGKVVWGKFAQVTNNPENDGCINAVLLI 259
>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
protein Y39B6A.30 protein.
Length = 1408
Score = 32.7 bits (71), Expect = 0.34
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = -3
Query: 802 KAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTE-KVAEGALPVYLLDRDVQSRAKVLSNM 626
K K +ERR E+ + KK+K +EK N + + E +++ + A+ L N+
Sbjct: 989 KIKAAEEERRKERAEDAKKVKEGQEKIAILNAKVQEKEDKSEARRKQKEMDNEAEKLLNV 1048
Query: 625 IKQKRKEK-AGKW 590
K+K K K KW
Sbjct: 1049 EKEKEKRKIIEKW 1061
Score = 31.9 bits (69), Expect = 0.59
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Frame = -3
Query: 835 RAEKARKLRGIKAKIFNKERRNEKIQM-KKKIKAHEEKNVKHNTEKVAEGALPVYLLDRD 659
+ EK R +KA+ + EK+++ K+K+KA E+K E+ E A + ++
Sbjct: 952 KVEKERNKEKVKAEEERLKAEEEKVKIEKEKVKAEEQKIKAAEEERRKERAEDAKKV-KE 1010
Query: 658 VQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRK 509
Q + +L+ +++K + + + + + D E K+L K K K
Sbjct: 1011 GQEKIAILNAKVQEKEDKSEAR------RKQKEMDNEAEKLLNVEKEKEK 1054
>Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical
protein R10D12.10 protein.
Length = 497
Score = 31.1 bits (67), Expect = 1.0
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Frame = -3
Query: 838 KRAEKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEK--NVKHNTEKVAEGALPVYLLD 665
K +K ++ K K +KE+ EK + K+KIK E+K +++ TE+ +E A L
Sbjct: 377 KEKDKEKEKEKEKEKEKDKEKEREKRKSKEKIKEKEKKMGSLEKTTERTSE-APSTNALP 435
Query: 664 RDVQSRAKVLSNMIKQKRKEKAGKWDV-------PIPKVRAQADAEVFK--VLKSGKSKR 512
+ + + L KQK + + V PI K + A+V K V G SK+
Sbjct: 436 KAKPKKIRTLPP--KQKHTKTSSTSSVSHQTPPSPIKKPSPKLPAQVKKKTVSTGGGSKQ 493
Query: 511 KA 506
KA
Sbjct: 494 KA 495
>AL031629-3|CAA20976.1| 555|Caenorhabditis elegans Hypothetical
protein Y106G6D.3 protein.
Length = 555
Score = 31.1 bits (67), Expect = 1.0
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = -3
Query: 838 KRAEKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLL--D 665
+R +A++ + +KA+ K ++NE++ KK K K K +T++ E A +L
Sbjct: 254 RRRRRAKEDQNVKARKTKKVKKNEEVPSKKSSKM--SKRSKRSTDENLETAKSSRILKDS 311
Query: 664 RDVQSRAKVLSNMIKQKR 611
SR+ V S I R
Sbjct: 312 EPKSSRSSVTSQKIDSSR 329
>Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical
protein T05F1.11 protein.
Length = 676
Score = 30.7 bits (66), Expect = 1.4
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Frame = -3
Query: 784 KERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKE 605
+E R E+I+ KK+ + ++K + + AE + V L ++ + R +VL ++ KRK
Sbjct: 429 EEERLEEIRRKKE-EERKKKEEEDEKRRKAEESERVRKL-KEEEKRKRVLEEEMEMKRKN 486
Query: 604 KAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGE-NFTRKPPKFERFI 428
+ K + AE+ + + ++ +K K K+ + F + P F R +
Sbjct: 487 EEAKIKLEAEMREKAEQAEIKRREEKSRALKKLQKEETNKMEQMNNCTFLQNVPLF-RHL 545
Query: 427 RP 422
P
Sbjct: 546 HP 547
>AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical
protein Y39B6A.18 protein.
Length = 1352
Score = 30.7 bits (66), Expect = 1.4
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
Frame = -3
Query: 835 RAEKARKLRGIKAKIFNKERRNEKIQMKK--------KIKAHEEKNVKHNTE---KVAEG 689
+ EK R +KA+ + EK++++K KIK+ EE+ K E KV EG
Sbjct: 913 KVEKERNKEKVKAEEERLKAEEEKVKIEKEKVKAEEQKIKSAEEERRKERAEDAKKVKEG 972
Query: 688 ALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKV 569
+ +L+ + Q R KQK + + + + KV
Sbjct: 973 QEKIAMLNAENQERKDRSEARRKQKEMDNEAEKLLKVKKV 1012
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -3
Query: 838 KRAEKARKLRGIKAKIFNKERRNEKIQM-KKKIKAHEEKNVKHNTEKV 698
K+ E+ K K K+ KER EK++ ++++KA EEK VK EKV
Sbjct: 899 KKEEERLKAEEEKVKV-EKERNKEKVKAEEERLKAEEEK-VKIEKEKV 944
>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
protein Y80D3A.8 protein.
Length = 1293
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 838 KRAEKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEK 701
+ AE K+ + AK+ KE R+E + +K+ EEK + EK
Sbjct: 928 REAEDKEKIEQLNAKVREKEERSEARRKQKEKDDEEEKRLYEEKEK 973
>Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical
protein T04D3.2 protein.
Length = 604
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = -3
Query: 829 EKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVK 716
E+ +K + I K+ +++N++I++KKK+ EEK K
Sbjct: 452 ERRKKTKIIYDKVQLAKKKNKEIKLKKKVLEEEEKTEK 489
>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical protein
F35G12.8 protein.
Length = 1549
Score = 29.9 bits (64), Expect = 2.4
Identities = 37/155 (23%), Positives = 63/155 (40%)
Frame = -3
Query: 838 KRAEKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRD 659
++AE KL GI ++ R K ++K+ K EK++ T ++ + D +
Sbjct: 896 RQAEIQSKLDGIFKELVQCHRDEAKESLQKRQKL--EKDIAKETANISNSGRNIAKCDEN 953
Query: 658 VQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVT 479
+ K + M K+K +E K A D EV KS K + +++ + K+
Sbjct: 954 ISRHDKDIEKM-KKKCEELMEK---------AIDDEEV----KSKKETVERFEKQIKKLQ 999
Query: 478 FVGENFTRKPPKFERFIRPMALRFKKAHVTHPELK 374
GE T+K + + KK ELK
Sbjct: 1000 TKGEEMTKKQSELSAAETKLEGELKKCSEGIKELK 1034
>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
protein Y11D7A.14 protein.
Length = 1464
Score = 29.9 bits (64), Expect = 2.4
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Frame = -3
Query: 784 KERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNM--IKQKR 611
+E NEK++++++I+ E KN E + E LLDR+ + KV + ++++
Sbjct: 831 EELENEKLKLEEEIQEMEIKN----EEALKENLKLSMLLDREKSEKVKVQKELEEVEKQG 886
Query: 610 KEKAGKWDVPIPKV--RAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRK 452
+EK + + K + + E+F VL + K + V K+ V + RK
Sbjct: 887 REKLLEKEREFRKTMEEMEQNEEIFNVL---ERKYNEQHKKVMKMNDVLREYERK 938
>AC024758-3|AAF59456.3| 1037|Caenorhabditis elegans Hypothetical
protein Y37E11AM.1 protein.
Length = 1037
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 829 EKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVK 716
E+A KL+ +K K KE EK+ ++K K +EK K
Sbjct: 988 EEAEKLKELKKKEIPKESYYEKLLKRQKAKEDDEKTEK 1025
>U80032-5|AAB53878.1| 552|Caenorhabditis elegans Hypothetical
protein C32E12.1 protein.
Length = 552
Score = 29.5 bits (63), Expect = 3.1
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Frame = -3
Query: 841 HKRAEKARKLRG-IKAK-IFNKERRNEKIQMKKK---IKAHEEKNVKHNTEK-VAEGALP 680
HK+ EK K +K K + +K +N+K + KK +K E+K+ K EK V +G+
Sbjct: 4 HKKTEKKTKTESPVKPKKVASKHVKNKKDKKDKKDRKVKKVEQKDKKDKKEKNVKKGS-- 61
Query: 679 VYLLDRDVQSRAKVLSNMIKQKRKEKAGK 593
D + AK+ N +K K+K K
Sbjct: 62 ----KSDPNAVAKIKKNKKDKKSKDKKPK 86
>U40799-1|AAA81479.1| 250|Caenorhabditis elegans Hypothetical
protein F42C5.3 protein.
Length = 250
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = -3
Query: 841 HKRAEKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGAL 683
H + K+ L+ I I+NKE+ NE + KK+ +K ++ KV +L
Sbjct: 133 HSNSNKSDVLKEIDTLIYNKEKLNEVLITAKKLLGKCQKFTTSDSFKVINDSL 185
>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
spermatogenesis protein15 protein.
Length = 1219
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = -3
Query: 769 EKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSR--AKVLSNMIKQKRKEKAG 596
E+ + ++K A +EK ++ E+ E A Y L ++Q + A +K++ KE+
Sbjct: 942 ERREAEEKAAAEQEKILRRKMEEEREKAQKEYELQLEMQKQKLAAEAEEEVKRRNKEERD 1001
Query: 595 KWDVPIPKVRAQAD 554
+ D + A +D
Sbjct: 1002 RLDAAVSSRLASSD 1015
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 29.1 bits (62), Expect = 4.2
Identities = 29/131 (22%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
Frame = -3
Query: 841 HKRAEKARKLRGIKAKIFNKERR---NEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYL 671
H A + K A+ F+K+ R ++ ++A +NVK+ TEK++E + +
Sbjct: 472 HMHALECLKKLNNNAETFHKDHRPIVEFSVENLLALQARARRNVKNTTEKMSERVVNEKI 531
Query: 670 LDRDVQSRAKVLSNMI---------KQKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKS 518
+ QS +V + + K + + +G+ + +V+A +++ ++ S
Sbjct: 532 RQQVKQSIGEVHTAGMKFLPKFTGKKIRHRNLSGRAKKNVDRVKAAKNSKQPEMPTSVGK 591
Query: 517 KRKAWKRMVTK 485
K+KA K+ V+K
Sbjct: 592 KKKAMKKNVSK 602
>Z82078-9|CAE11308.1| 949|Caenorhabditis elegans Hypothetical
protein Y48A6B.11b protein.
Length = 949
Score = 29.1 bits (62), Expect = 4.2
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -3
Query: 787 NKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKR- 611
N E+ + + ++ K + H EK N E + EG PV++ + Q + + +R
Sbjct: 18 NDEKPAKSVLLEPKYRDHHEKISFRNKENMEEGEKPVFVSMANPQPTREDYERYDEDRRL 77
Query: 610 KEKAGKWDVPIPKVRAQADAE 548
K+KA D+ I + R A E
Sbjct: 78 KDKAR--DLRIARRRNSATPE 96
>Z35663-6|CAD82917.1| 606|Caenorhabditis elegans Hypothetical
protein T04A8.7b protein.
Length = 606
Score = 29.1 bits (62), Expect = 4.2
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 17/91 (18%)
Frame = -3
Query: 613 RKEKAGKWDVPIP-KVRAQADAEVFKVLKSGKSKRKA-------WKRMVT----KVTFV- 473
+KE+ GKW + +P K V+K S+ A W VT K T +
Sbjct: 20 KKEEHGKWSITVPAKEDGSCPIPHNSVIKIAVSRHGATHFKLSPWATFVTCPNPKETVIY 79
Query: 472 GENFTRKPPKFE----RFIRPMALRFKKAHV 392
+NF P K++ R RP +LR +AHV
Sbjct: 80 HQNFWNPPEKYQLKEARPARPASLRIYEAHV 110
>Z35663-5|CAA84727.1| 681|Caenorhabditis elegans Hypothetical
protein T04A8.7a protein.
Length = 681
Score = 29.1 bits (62), Expect = 4.2
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 17/91 (18%)
Frame = -3
Query: 613 RKEKAGKWDVPIP-KVRAQADAEVFKVLKSGKSKRKA-------WKRMVT----KVTFV- 473
+KE+ GKW + +P K V+K S+ A W VT K T +
Sbjct: 95 KKEEHGKWSITVPAKEDGSCPIPHNSVIKIAVSRHGATHFKLSPWATFVTCPNPKETVIY 154
Query: 472 GENFTRKPPKFE----RFIRPMALRFKKAHV 392
+NF P K++ R RP +LR +AHV
Sbjct: 155 HQNFWNPPEKYQLKEARPARPASLRIYEAHV 185
>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
protein C52B9.8 protein.
Length = 1336
Score = 29.1 bits (62), Expect = 4.2
Identities = 24/84 (28%), Positives = 38/84 (45%)
Frame = -3
Query: 844 PHKRAEKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLD 665
PHK EK ++ K K +K + EK + K K K H++K+ + TE+ L
Sbjct: 1233 PHKEKEKDKE----KEKEEDKGKEKEKHKDKDKDKEHKKKSREDETEEERRARKEAKRLK 1288
Query: 664 RDVQSRAKVLSNMIKQKRKEKAGK 593
R Q + +++K KA K
Sbjct: 1289 R--QKEEQEDDAKLQEKLARKAAK 1310
>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily assigned
gene nameprotein 213 protein.
Length = 1437
Score = 29.1 bits (62), Expect = 4.2
Identities = 24/100 (24%), Positives = 45/100 (45%)
Frame = -3
Query: 844 PHKRAEKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLD 665
P+K+ + K K+ +++ + + + KKIK +KN ++EKV + V+
Sbjct: 1160 PNKKVSVGAEKPKKKEKVVDEKDKADGEPVDKKIKVDSKKNGTTSSEKVVKDD-EVHQNG 1218
Query: 664 RDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEV 545
+ + +A V N ++KR K+ K D EV
Sbjct: 1219 SETEKKATV-DNKERKKRPGKSSHGSKESKKEPTTEDGEV 1257
>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
protein F42C5.10 protein.
Length = 1292
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/100 (21%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = -3
Query: 829 EKARKLRGI-KAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQ 653
E R +RG + ++ +E+R + ++++ +IKA E +H E++ E + + +
Sbjct: 666 EMERAMRGEERERLLEEEKRRKYLELQNEIKAAREYEEEHAYEEIQESKNTPCPVSQPIL 725
Query: 652 SRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVL 533
+ + + + EK + P PK D + K L
Sbjct: 726 IPSVFVPVAVPEPIPEKPKRTWQPPPKSEEFLDEHIDKPL 765
>AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode
polyprotein allergen related,post-translationnally
cleaved, the diverse 14.5 kDa cleavageproducts bind
lipids and retinol (164.6 kD) protein.
Length = 1440
Score = 29.1 bits (62), Expect = 4.2
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Frame = -3
Query: 751 KKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVP--I 578
+KIK H K ++ + +GA V + ++++ A+ + + + KE + DV I
Sbjct: 967 EKIKEHVASGDKEASKALVKGA--VDRQEGEIKTIAEKMFGICGEVYKESKSRRDVAAKI 1024
Query: 577 PK----VRAQADAEVFKVLKSGKSKRKAWKRMVTKV 482
K ++A+ E+ K+ K GKSK KR+ V
Sbjct: 1025 EKHLSWLQAEEKEEILKMSKEGKSKDDIKKRLFEMV 1060
>AL023844-13|CAE11312.1| 949|Caenorhabditis elegans Hypothetical
protein Y48A6B.11b protein.
Length = 949
Score = 29.1 bits (62), Expect = 4.2
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -3
Query: 787 NKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKR- 611
N E+ + + ++ K + H EK N E + EG PV++ + Q + + +R
Sbjct: 18 NDEKPAKSVLLEPKYRDHHEKISFRNKENMEEGEKPVFVSMANPQPTREDYERYDEDRRL 77
Query: 610 KEKAGKWDVPIPKVRAQADAE 548
K+KA D+ I + R A E
Sbjct: 78 KDKAR--DLRIARRRNSATPE 96
>AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform c protein.
Length = 1198
Score = 29.1 bits (62), Expect = 4.2
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Frame = -3
Query: 751 KKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVP--I 578
+KIK H K ++ + +GA V + ++++ A+ + + + KE + DV I
Sbjct: 725 EKIKEHVASGDKEASKALVKGA--VDRQEGEIKTIAEKMFGICGEVYKESKSRRDVAAKI 782
Query: 577 PK----VRAQADAEVFKVLKSGKSKRKAWKRMVTKV 482
K ++A+ E+ K+ K GKSK KR+ V
Sbjct: 783 EKHLSWLQAEEKEEILKMSKEGKSKDDIKKRLFEMV 818
>AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform a protein.
Length = 1440
Score = 29.1 bits (62), Expect = 4.2
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Frame = -3
Query: 751 KKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVP--I 578
+KIK H K ++ + +GA V + ++++ A+ + + + KE + DV I
Sbjct: 967 EKIKEHVASGDKEASKALVKGA--VDRQEGEIKTIAEKMFGICGEVYKESKSRRDVAAKI 1024
Query: 577 PK----VRAQADAEVFKVLKSGKSKRKAWKRMVTKV 482
K ++A+ E+ K+ K GKSK KR+ V
Sbjct: 1025 EKHLSWLQAEEKEEILKMSKEGKSKDDIKKRLFEMV 1060
>U80030-10|AAG24167.2| 378|Caenorhabditis elegans Serpentine
receptor, class w protein136 protein.
Length = 378
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +3
Query: 375 FSSGCVTWAFLNLSAIGLMNRSNLGGLRVKFSPTNVTLVTMRFQAFLFDLP 527
FS C TW FL+++ I + N L+ K T F FL LP
Sbjct: 122 FSRRCSTWLFLSIAFIRTLIVRNPMNLKYKQLSNQPTAFYTIFGVFLLSLP 172
>U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical
protein F41G3.3 protein.
Length = 577
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -3
Query: 736 HEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLS--NMIKQKRKEKAGKWD 587
+ KNV EK+ G P+ + D D+ A V + +Q++ +KA +W+
Sbjct: 305 NSSKNVAEVVEKMNNGDWPIQIEDEDIPPSAAVNNPKRGYQQQQADKARQWE 356
>U00049-3|AAC47059.1| 339|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 7 protein.
Length = 339
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -1
Query: 114 LLNCDNYTFNNEHVYHNTY--NLYWLQSLWTVRTM 16
+ N + Y N Y N Y + YW+Q LW + T+
Sbjct: 7 IYNLEQYGTNCSEEYSNFYENSKYWIQCLWLIPTL 41
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical protein
F07A11.6e protein.
Length = 2101
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = -3
Query: 829 EKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDV-- 656
+ A K G AK K+R+ K++ ++ + +KN K + + + D
Sbjct: 1046 DAAAKHPGWSAKDDQKQRKR-KLEHRRSSEDESKKNAKRDFRDIPHEDVSDEEETEDGSR 1104
Query: 655 ---QSRAKVLSNMIKQKRKEKAGK 593
QS + +SN+ ++RKEK+GK
Sbjct: 1105 SRRQSTSSTISNVTAKERKEKSGK 1128
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 838 KRAEKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKH 713
KR E R+ R + K ER+ EK +++KK + + K KH
Sbjct: 812 KRLEDERQERKREKKKERDERKKEKEKVRKKAEKEKLKKKKH 853
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical protein
F07A11.6c protein.
Length = 2392
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = -3
Query: 829 EKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDV-- 656
+ A K G AK K+R+ K++ ++ + +KN K + + + D
Sbjct: 1337 DAAAKHPGWSAKDDQKQRKR-KLEHRRSSEDESKKNAKRDFRDIPHEDVSDEEETEDGSR 1395
Query: 655 ---QSRAKVLSNMIKQKRKEKAGK 593
QS + +SN+ ++RKEK+GK
Sbjct: 1396 SRRQSTSSTISNVTAKERKEKSGK 1419
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 838 KRAEKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKH 713
KR E R+ R + K ER+ EK +++KK + + K KH
Sbjct: 1103 KRLEDERQERKREKKKERDERKKEKEKVRKKAEKEKLKKKKH 1144
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical protein
F07A11.6b protein.
Length = 2407
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = -3
Query: 829 EKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDV-- 656
+ A K G AK K+R+ K++ ++ + +KN K + + + D
Sbjct: 1352 DAAAKHPGWSAKDDQKQRKR-KLEHRRSSEDESKKNAKRDFRDIPHEDVSDEEETEDGSR 1410
Query: 655 ---QSRAKVLSNMIKQKRKEKAGK 593
QS + +SN+ ++RKEK+GK
Sbjct: 1411 SRRQSTSSTISNVTAKERKEKSGK 1434
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 838 KRAEKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKH 713
KR E R+ R + K ER+ EK +++KK + + K KH
Sbjct: 1118 KRLEDERQERKREKKKERDERKKEKEKVRKKAEKEKLKKKKH 1159
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = -3
Query: 829 EKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDV-- 656
+ A K G AK K+R+ K++ ++ + +KN K + + + D
Sbjct: 1352 DAAAKHPGWSAKDDQKQRKR-KLEHRRSSEDESKKNAKRDFRDIPHEDVSDEEETEDGSR 1410
Query: 655 ---QSRAKVLSNMIKQKRKEKAGK 593
QS + +SN+ ++RKEK+GK
Sbjct: 1411 SRRQSTSSTISNVTAKERKEKSGK 1434
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 838 KRAEKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKH 713
KR E R+ R + K ER+ EK +++KK + + K KH
Sbjct: 1118 KRLEDERQERKREKKKERDERKKEKEKVRKKAEKEKLKKKKH 1159
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = -3
Query: 829 EKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDV-- 656
+ A K G AK K+R+ K++ ++ + +KN K + + + D
Sbjct: 1046 DAAAKHPGWSAKDDQKQRKR-KLEHRRSSEDESKKNAKRDFRDIPHEDVSDEEETEDGSR 1104
Query: 655 ---QSRAKVLSNMIKQKRKEKAGK 593
QS + +SN+ ++RKEK+GK
Sbjct: 1105 SRRQSTSSTISNVTAKERKEKSGK 1128
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 838 KRAEKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKH 713
KR E R+ R + K ER+ EK +++KK + + K KH
Sbjct: 812 KRLEDERQERKREKKKERDERKKEKEKVRKKAEKEKLKKKKH 853
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = -3
Query: 829 EKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDV-- 656
+ A K G AK K+R+ K++ ++ + +KN K + + + D
Sbjct: 1337 DAAAKHPGWSAKDDQKQRKR-KLEHRRSSEDESKKNAKRDFRDIPHEDVSDEEETEDGSR 1395
Query: 655 ---QSRAKVLSNMIKQKRKEKAGK 593
QS + +SN+ ++RKEK+GK
Sbjct: 1396 SRRQSTSSTISNVTAKERKEKSGK 1419
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 838 KRAEKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKH 713
KR E R+ R + K ER+ EK +++KK + + K KH
Sbjct: 1103 KRLEDERQERKREKKKERDERKKEKEKVRKKAEKEKLKKKKH 1144
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = -3
Query: 829 EKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDV-- 656
+ A K G AK K+R+ K++ ++ + +KN K + + + D
Sbjct: 1352 DAAAKHPGWSAKDDQKQRKR-KLEHRRSSEDESKKNAKRDFRDIPHEDVSDEEETEDGSR 1410
Query: 655 ---QSRAKVLSNMIKQKRKEKAGK 593
QS + +SN+ ++RKEK+GK
Sbjct: 1411 SRRQSTSSTISNVTAKERKEKSGK 1434
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 838 KRAEKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKH 713
KR E R+ R + K ER+ EK +++KK + + K KH
Sbjct: 1118 KRLEDERQERKREKKKERDERKKEKEKVRKKAEKEKLKKKKH 1159
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = -3
Query: 829 EKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDV-- 656
+ A K G AK K+R+ K++ ++ + +KN K + + + D
Sbjct: 1352 DAAAKHPGWSAKDDQKQRKR-KLEHRRSSEDESKKNAKRDFRDIPHEDVSDEEETEDGSR 1410
Query: 655 ---QSRAKVLSNMIKQKRKEKAGK 593
QS + +SN+ ++RKEK+GK
Sbjct: 1411 SRRQSTSSTISNVTAKERKEKSGK 1434
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 838 KRAEKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKH 713
KR E R+ R + K ER+ EK +++KK + + K KH
Sbjct: 1118 KRLEDERQERKREKKKERDERKKEKEKVRKKAEKEKLKKKKH 1159
>U70854-5|AAB09157.1| 589|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 11 protein.
Length = 589
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/83 (21%), Positives = 36/83 (43%)
Frame = -3
Query: 838 KRAEKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRD 659
K+ ++A+K + + K + E I +K+ K E K ++ A+ +RD
Sbjct: 294 KKEQQAKKDKAKEDKQRAIREKQEAIDREKREKEEAEAKQKEEADRKAKEEREREKKERD 353
Query: 658 VQSRAKVLSNMIKQKRKEKAGKW 590
+ +A +K ++AG W
Sbjct: 354 IAKKAMSQQRKRLKKLADEAGHW 376
>U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical
protein C18H9.8 protein.
Length = 674
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/72 (22%), Positives = 34/72 (47%)
Frame = -3
Query: 838 KRAEKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRD 659
K E+A ++R + ++FN+ R E+ +I+ E+K + + + D
Sbjct: 265 KMKEQADEMRSLAEEVFNERRAKEEELQGLEIEVEEQKKLNEAVTHAMDPQMKEKY--ED 322
Query: 658 VQSRAKVLSNMI 623
++S AK+L +
Sbjct: 323 LKSEAKLLRERV 334
>AF025453-10|AAK31402.3| 487|Caenorhabditis elegans Hypothetical
protein C08F1.1 protein.
Length = 487
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 165 WSNLLLSQGKIKMLQLHLLNCDNYTFNNEH 76
W L +S K +M L L+CD + N+EH
Sbjct: 374 WKTLRISVKKEQMCILVYLHCDKFVCNDEH 403
>Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical
protein T08A11.2 protein.
Length = 1322
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -3
Query: 670 LDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQAD 554
++R++ RAK + + ++K G+WD P A +D
Sbjct: 169 VERELADRAKAGELHVTGQPEKKKGRWDAEAPSTDASSD 207
>Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical
protein T08A11.2 protein.
Length = 1322
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -3
Query: 670 LDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQAD 554
++R++ RAK + + ++K G+WD P A +D
Sbjct: 169 VERELADRAKAGELHVTGQPEKKKGRWDAEAPSTDASSD 207
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 347 SYYR*TESSF*FRMCDMGFLEPQCHRS 427
SY S + MC+MG + P CH+S
Sbjct: 1370 SYQDVDRSQMNYLMCNMGTVSPSCHKS 1396
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 347 SYYR*TESSF*FRMCDMGFLEPQCHRS 427
SY S + MC+MG + P CH+S
Sbjct: 1370 SYQDVDRSQMNYLMCNMGTVSPSCHKS 1396
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,981,747
Number of Sequences: 27780
Number of extensions: 368364
Number of successful extensions: 1305
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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