Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12l08
(490 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal pr... 137 3e-33
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 30 0.78
Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical p... 29 2.4
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n... 29 2.4
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical pr... 27 5.5
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ... 27 5.5
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage... 27 5.5
AC024808-5|AAK29931.1| 789|Caenorhabditis elegans Hypothetical ... 27 5.5
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 27 7.3
DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related ... 27 7.3
DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related ... 27 7.3
AF078792-2|AAC26946.1| 512|Caenorhabditis elegans Hypothetical ... 27 7.3
AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeti... 27 7.3
AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeti... 27 7.3
Z82083-9|CAB04975.1| 635|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z81503-6|CAB04115.1| 635|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 27 9.7
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 27 9.7
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 27 9.7
AL117206-10|CAB60452.2| 258|Caenorhabditis elegans Hypothetical... 27 9.7
AF016664-1|AAB66070.2| 324|Caenorhabditis elegans Serpentine re... 27 9.7
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 27 9.7
>AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 10 protein.
Length = 149
Score = 137 bits (332), Expect = 3e-33
Identities = 73/136 (53%), Positives = 86/136 (63%), Gaps = 3/136 (2%)
Frame = -3
Query: 458 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 279
M +PK + IYEYLF EGV VAKKD++A H +E + NL+VIK ++SL SR VKEQF
Sbjct: 1 MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60
Query: 278 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 99
AWRH+YWYLT+ GI YLR +L LP EIVPAT+K R V P A DR
Sbjct: 61 AWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPHED-RAPRAAQGEKGDRE 119
Query: 98 AYRR---TPAAPGVAP 60
AYR T A PG AP
Sbjct: 120 AYRTEKVTEAGPGGAP 135
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 30.3 bits (65), Expect = 0.78
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = -3
Query: 149 GPVGRPDAPARSAEDRSAYRRTPAAPGVAP 60
G V RP APAR A + R PAAP P
Sbjct: 33 GRVSRPAAPARGAPPAARGRPAPAAPANVP 62
>Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical
protein C25A1.10a protein.
Length = 971
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 137 RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLE 15
+ D+ + S++D + ++TPA P KKA+ S+D E
Sbjct: 432 KADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDE 472
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 137 RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFK 9
+ D+ + S++D + ++TPA P KKA+ S+D E K
Sbjct: 279 KADSSSDSSDDEAPAKKTPAKAAPKPVAKKAESSSDSSDDEKK 321
>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
isoform a protein.
Length = 1702
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 14 IQDQLSLDQHQPFYHEVQHQGQQE 85
+Q+Q + Q Q F H+ QHQ QQE
Sbjct: 1183 MQEQSNEQQSQVFQHQHQHQAQQE 1206
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 149 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSAD 21
G +P A ++ A+D SAY+RT H +K + PG +D
Sbjct: 82 GDANKPRAWSKYAKDSSAYKRT--------HGEKEEANPGKSD 116
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = -3
Query: 149 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 27
GP G+P AP + D P P P AD PG+
Sbjct: 225 GPQGQPGAPGQPGHDGQPGAPGPKGPNGNPGAPGADGNPGA 265
>Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical
protein C09G5.4 protein.
Length = 323
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = -3
Query: 152 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSA 24
+GP G+P P + A R PA AP A PG A
Sbjct: 152 QGPNGQPGHPGQGGSQGPAGPRGPAGDAGAPGQVGAPGNPGQA 194
>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
protein Y39A1B.3 protein.
Length = 1499
Score = 27.5 bits (58), Expect = 5.5
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = -3
Query: 194 PATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK 51
P T+ S RT + R PA+S ED S PAAP A K
Sbjct: 1432 PTTMSGSSRTTSRAANSRRRAPPPAQSDEDDSDSDDAPAAPRSAARRK 1479
>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
compensation protein protein.
Length = 1455
Score = 27.5 bits (58), Expect = 5.5
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = -3
Query: 194 PATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK 51
P T+ S RT + R PA+S ED S PAAP A K
Sbjct: 1388 PTTMSGSSRTTSRAANSRRRAPPPAQSDEDDSDSDDAPAAPRSAARRK 1435
>AC024808-5|AAK29931.1| 789|Caenorhabditis elegans Hypothetical
protein Y53G8AM.8 protein.
Length = 789
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 161 TVRRGPVGRPDAPARSAEDRSAYRRTPAA 75
T+ PVGR ++ ARS ++ SA R+ P +
Sbjct: 8 TIENTPVGRGNSGARSHKEPSAKRKKPTS 36
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -3
Query: 149 GPVGRPDAPARSAEDRSAYRRTPAAPGVA-PHDKKADVGPGSA 24
GP G P AP E S R+ ++PG A P GP A
Sbjct: 146 GPDGNPGAPGNDGEAGSPGTRSISSPGPAGPAGPPGPPGPDGA 188
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -3
Query: 149 GPVGRPDAPARSAEDRSAYRRTPAAPGVA-PHDKKADVGPGSA 24
GP G P AP E S R+ ++PG A P GP A
Sbjct: 146 GPDGNPGAPGNDGEAGSPGTRSISSPGPAGPAGPPGPPGPDGA 188
>DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related
alternative variant b protein.
Length = 482
Score = 27.1 bits (57), Expect = 7.3
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = -3
Query: 212 LPPEIVP-ATLKRS--VRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD 42
L P+I P AT RS +R V+ P APA + ++++A R A G A + +
Sbjct: 323 LTPKIRPIATANRSSILRMNVVK--PTVPAPAPADAQQNKAASRPAVPAGGAARNRQPLR 380
Query: 41 VGPGSADLEFK 9
V PG+ K
Sbjct: 381 VNPGTPSTTIK 391
>DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related
alternative variant a protein.
Length = 507
Score = 27.1 bits (57), Expect = 7.3
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = -3
Query: 212 LPPEIVP-ATLKRS--VRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD 42
L P+I P AT RS +R V+ P APA + ++++A R A G A + +
Sbjct: 323 LTPKIRPIATANRSSILRMNVVK--PTVPAPAPADAQQNKAASRPAVPAGGAARNRQPLR 380
Query: 41 VGPGSADLEFK 9
V PG+ K
Sbjct: 381 VNPGTPSTTIK 391
>AF078792-2|AAC26946.1| 512|Caenorhabditis elegans Hypothetical
protein Y40D12A.2 protein.
Length = 512
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -3
Query: 374 APKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNE 243
AP ++ +PNL + ++S GY+ + FYWY+ +E
Sbjct: 16 APADQQITSLPNLT--EPLRSKHYAGYLSISDVKQLFYWYVESE 57
>AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform b
protein.
Length = 482
Score = 27.1 bits (57), Expect = 7.3
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = -3
Query: 212 LPPEIVP-ATLKRS--VRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD 42
L P+I P AT RS +R V+ P APA + ++++A R A G A + +
Sbjct: 323 LTPKIRPIATANRSSILRMNVVK--PTVPAPAPADAQQNKAASRPAVPAGGAARNRQPLR 380
Query: 41 VGPGSADLEFK 9
V PG+ K
Sbjct: 381 VNPGTPSTTIK 391
>AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform a
protein.
Length = 507
Score = 27.1 bits (57), Expect = 7.3
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = -3
Query: 212 LPPEIVP-ATLKRS--VRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD 42
L P+I P AT RS +R V+ P APA + ++++A R A G A + +
Sbjct: 323 LTPKIRPIATANRSSILRMNVVK--PTVPAPAPADAQQNKAASRPAVPAGGAARNRQPLR 380
Query: 41 VGPGSADLEFK 9
V PG+ K
Sbjct: 381 VNPGTPSTTIK 391
>Z82083-9|CAB04975.1| 635|Caenorhabditis elegans Hypothetical
protein ZK1010.9 protein.
Length = 635
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -3
Query: 206 PEIVPATLKR-SVRTETVRRGPVGRPDAPARSAEDRSAYR 90
P ++P T SV+T+ +GPV P R AYR
Sbjct: 17 PSVIPPTAPTASVKTKAPTKGPVQPQKKPTTVDNGRRAYR 56
>Z81503-6|CAB04115.1| 635|Caenorhabditis elegans Hypothetical
protein ZK1010.9 protein.
Length = 635
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -3
Query: 206 PEIVPATLKR-SVRTETVRRGPVGRPDAPARSAEDRSAYR 90
P ++P T SV+T+ +GPV P R AYR
Sbjct: 17 PSVIPPTAPTASVKTKAPTKGPVQPQKKPTTVDNGRRAYR 56
>Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical
protein F25D7.4 protein.
Length = 932
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 64 ATPGAAGVRLYADLSSAERAGASGRPTGPRRTVSVRT 174
+T GAA R SA RA S P GP R + R+
Sbjct: 305 STTGAARTRPAVPAVSAPRALTSRAPAGPARPTTTRS 341
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = -3
Query: 149 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 27
GP G P AP + D P P P AD PG+
Sbjct: 225 GPQGPPGAPGQPGHDGQPGAPGPKGPNGNPGAPGADGNPGA 265
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = -3
Query: 149 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 27
GP G P AP + D P P P AD PG+
Sbjct: 225 GPQGPPGAPGQPGHDGQPGAPGPKGPNGNPGAPGADGNPGA 265
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = -3
Query: 149 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 27
GP G P AP + D P P P AD PG+
Sbjct: 225 GPQGPPGAPGQPGHDGQPGAPGPKGPNGNPGAPGADGNPGA 265
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = -3
Query: 149 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 27
GP G P AP + D P P P AD PG+
Sbjct: 225 GPQGPPGAPGQPGHDGQPGAPGPKGPNGNPGAPGADGNPGA 265
>AL117206-10|CAB60452.2| 258|Caenorhabditis elegans Hypothetical
protein Y67A10A.2 protein.
Length = 258
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 84 STSVCRSVLSRAGWGIRTTNRATAYCLCTY 173
STS C S S+ + IRT + CL T+
Sbjct: 153 STSTCSSSTSKTPFSIRTPLNQASQCLSTF 182
>AF016664-1|AAB66070.2| 324|Caenorhabditis elegans Serpentine
receptor, class i protein77 protein.
Length = 324
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -3
Query: 344 PNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPP--EIVPATLKRS 174
P +QV+ + + ++ E F W+ T+ I + +F+ PP +I+ LK++
Sbjct: 257 PMIQVLILVFEIPQMNFISELI----FAWFATHSSINMVSLFIFFPPYRKIIAKGLKKT 311
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 149 GPVGRPDAPARSAEDRSAYRRTPAAPGVA 63
G G P +P + ED + TP APG A
Sbjct: 198 GNPGAPGSPGKPGEDGKSEPITPGAPGPA 226
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,830,319
Number of Sequences: 27780
Number of extensions: 222104
Number of successful extensions: 857
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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