Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12l06
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    27   3.1  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    27   3.1  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    26   5.4  
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    26   7.1  
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    26   7.1  
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    26   7.1  
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    25   9.4  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   9.4  

>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = -2

Query: 781 NAFKYIKDNGGIDTEQTYPYEGVDDKCRYNPKNTGAEDVGFVDIPEGDEQKLMEAVATVG 602
           N ++Y+KD+  I        +GVDDK  +       + +GF D    D   ++  +  +G
Sbjct: 293 NDYRYLKDSVHI-------IDGVDDKEEFKTLLAAFKTLGFDDKENFDLFNILSIILHMG 345

Query: 601 PVSVAIDAS 575
            + V  D S
Sbjct: 346 NIDVGADRS 354


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 601 PVSVAIDASHTSFQLYSSGVYNEEECSSTDLDHG 500
           P S + D    SF  +SSG +++E  + +D D G
Sbjct: 173 PTSFSNDLKKPSFNSFSSGSFDDEFSAPSDEDEG 206


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -2

Query: 328 SLPRSCNIHISYVYLWLS--YLCNMYNS 251
           +LP S  + I YVY W     LCN+ +S
Sbjct: 290 TLPHSSTVAIMYVYSWTGTVSLCNLVSS 317


>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 766 IKDNGGIDTEQTYPYEGVDDKCRYN 692
           IK NGGI    T P   +D K  YN
Sbjct: 180 IKKNGGIKFNHTVPLTHMDYKMAYN 204


>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 1/116 (0%)
 Frame = -2

Query: 781 NAFKYIKDNGGIDTEQTYPYEGVDDKCRYNPKNTGAEDV-GFVDIPEGDEQKLMEAVATV 605
           N  K++  NG I   Q  P    DD    N    G  D    +  P     +  ++    
Sbjct: 100 NGPKHVAKNGLIPLTQRKPNCVWDDAPVDNDSTAGNLDSDSALPTPSVTTNEAADSSRAS 159

Query: 604 GPVSVAIDASHTSFQLYSSGVYNEEECSSTDLDHGVLVVGYGTDEQGVDYWLVKNS 437
            PV+  +       ++ +S + N    ++TD+         G D+   D    K+S
Sbjct: 160 SPVTRVVAVHDNKKKIINSNISNAPPFNNTDVQASARPPAAGQDDSAADASTTKSS 215


>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 434 PRVLHEPVVHALLVGAVT 487
           P V H P+ H LL G VT
Sbjct: 198 PLVAHSPLAHGLLTGRVT 215


>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 658 VDIPEGDEQKLMEAVATVGPVSVAID 581
           +D+P G  + L+ A  T  P SVA+D
Sbjct: 237 IDLPAGPSEVLVIADETCNPESVALD 262


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 579  ASMATETGPTVATASISFCSSPSGMSTKPTSSAPVFLGLYLHLSSTP 719
            +S A  T P + ++++   S+P   ST   +S P+     ++ SSTP
Sbjct: 1646 SSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVN-SSTP 1691


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,608,737
Number of Sequences: 5004
Number of extensions: 46895
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)