Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12k24
(872 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 236 3e-63
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 138 1e-33
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 126 3e-30
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 31 0.28
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch... 30 0.49
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 29 0.65
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 28 1.5
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 27 3.5
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 27 3.5
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo... 27 4.6
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 27 4.6
SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|ch... 27 4.6
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 26 8.1
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 236 bits (578), Expect = 3e-63
Identities = 131/277 (47%), Positives = 184/277 (66%), Gaps = 5/277 (1%)
Frame = -3
Query: 864 AKXQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQ-QSTSFQLPTE 688
+K QRMFQDI +S+++ E F + + + +IDFS VL + WP + +F LP E
Sbjct: 497 SKLQRMFQDISLSQEITEAFWQLPQSRAG---NIDFSALVLGTSFWPLSPNNVNFHLPEE 553
Query: 687 LERSVHRFTTFYSSQHSGRKLNWLYNMSKGELLT--NCFKN-RYTLQASTFQMAVLLQYN 517
L F +Y S H+GRKL+WL+++SKGE+ N N Y Q ST+QM VLL YN
Sbjct: 554 LVPLYEGFQNYYYSCHNGRKLSWLFHLSKGEIKARINPQTNVTYVFQVSTYQMGVLLLYN 613
Query: 516 DNTSWTVRQLEQHTGIKGDFLIQVLQILLKAKLLVCQEDEAELGE-NSVVDLYSGYKNKK 340
S+T +L + TG+ DFL +L I LKAK+L+ +++ +LG+ NS + ++ KK
Sbjct: 614 HRDSYTYEELAKITGLSTDFLTGILNIFLKAKVLLLGDND-KLGDPNSTYKINENFRMKK 672
Query: 339 LRVNINIPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLS 160
+RV +N+P+++E K E THK IEEDRK+L+Q+AIVRIMK R+TLKH LV E ++Q+
Sbjct: 673 IRVQLNLPIRSEQKQESLETHKTIEEDRKLLLQSAIVRIMKARRTLKHVVLVKETIDQIK 732
Query: 159 SRFKPRVPVIKKCIDILIEKEYLERTEGEKDTYSYLA 49
SRF P+V IK+CID+LIEKEYLER +G +D Y YLA
Sbjct: 733 SRFTPKVSDIKQCIDMLIEKEYLER-QG-RDEYIYLA 767
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 138 bits (333), Expect = 1e-33
Identities = 88/281 (31%), Positives = 142/281 (50%), Gaps = 10/281 (3%)
Frame = -3
Query: 861 KXQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQST---SFQLPT 691
K + MF D+ +S++L + ++ + A S +P +D ++ +L+S WP S P
Sbjct: 506 KLEGMFNDMNLSQELLQEYKHNSALQSAKPA-LDLNVSILASTFWPIDLSPHKIKCNFPK 564
Query: 690 ELERSVHRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKNRYTLQASTFQMAVLLQYND- 514
L + +FT FY S+H+GRKL W +M ++ N +Y L ST +LL + D
Sbjct: 565 VLLAQIDQFTDFYLSKHTGRKLLWYPSMGSADVRVNFKDRKYDLNVSTIASVILLLFQDL 624
Query: 513 --NTSWTVRQLEQHTGIKGDFLIQVLQILLKAKLLVCQEDEAELGENSVVDLY--SGYKN 346
N ++ + T I+ L + LQ L AK + +D N+ Y + +
Sbjct: 625 KENQCLIFEEILEKTNIEVGDLKRNLQSLACAKYKILLKDPKGREVNAGDKFYFNENFVS 684
Query: 345 KKLRVNINIPLKTELK--VEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVL 172
R+ I+ +T ++ E++ T + ++E RK A IVR+MK RK +H L+ EV
Sbjct: 685 NLARIKISTVAQTRVEDDSERKRTLEKVDESRKHQADACIVRVMKDRKVCEHNQLMAEVT 744
Query: 171 NQLSSRFKPRVPVIKKCIDILIEKEYLERTEGEKDTYSYLA 49
QL+ RF P +IK+ I+ LIE+EYL+R Y YLA
Sbjct: 745 RQLNPRFHPSPMMIKRRIEALIEREYLQRQADNGRIYEYLA 785
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 734
Score = 126 bits (305), Expect = 3e-30
Identities = 80/268 (29%), Positives = 135/268 (50%), Gaps = 5/268 (1%)
Frame = -3
Query: 849 MFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELERSVH 670
MF+D+ +SK+ +FR A + LH D + VLS WP + +LP ++++ +
Sbjct: 468 MFRDVNISKEFTSSFRHSKAAHN---LHRDLYVNVLSQAYWPSYPESHIRLPDDMQQDLD 524
Query: 669 RFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKNRYTLQASTFQMAVLLQYND---NTSWT 499
F FY S+ G+K++W ++ + L S FQ VLLQ+N+ +
Sbjct: 525 CFEKFYLSKQVGKKISWYASLGHCIVKARFPLGNKELSISLFQACVLLQFNNCLGGEGIS 584
Query: 498 VRQLEQHTGIKGDFLIQVLQILLKAKL--LVCQEDEAELGENSVVDLYSGYKNKKLRVNI 325
+ L++ T + L + LQ L A++ LV + +++ + + +K RV I
Sbjct: 585 YQDLKKSTELSDIDLTRTLQSLSCARIRPLVMVPKSKKPSPDTMFYVNEKFTDKLYRVKI 644
Query: 324 NIPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLSSRFKP 145
N E + E + + DR+ +QA+IVR+MK ++ +KH LV V+N + R P
Sbjct: 645 NQIYLKEERQENSDVQEQVVRDRQFELQASIVRVMKQKEKMKHDDLVQYVINNVKDRGIP 704
Query: 144 RVPVIKKCIDILIEKEYLERTEGEKDTY 61
V +K I+ L+EKEYLER + + TY
Sbjct: 705 LVSDVKTAIEKLLEKEYLEREDNDIYTY 732
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 30.7 bits (66), Expect = 0.28
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +2
Query: 719 WKGHE-PDDSTWMLKSMCRGCSEL 787
W+G++ P D+TW ++ C GC +L
Sbjct: 104 WEGYDDPSDNTWSSEADCSGCKQL 127
>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 234
Score = 29.9 bits (64), Expect = 0.49
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 306 PSSTVCLYSRGAFCSCTPSRDRQPSSRQAQPRPLDTPTVSP 428
P+STV ++ + SC P+ DR S A R +T T SP
Sbjct: 146 PNSTVLTFTAVPYDSCLPAPDRHTPS-SASSRASETGTTSP 185
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 29.5 bits (63), Expect = 0.65
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 719 WKGHE-PDDSTWMLKSMCRGCSEL 787
W+G++ P D+TW + C GC EL
Sbjct: 199 WEGYDDPSDNTWNDEEDCAGCLEL 222
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 28.3 bits (60), Expect = 1.5
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = -3
Query: 282 THKHIEEDRKMLIQAAIVRIMKTRKT----LKHQHLVVEVLNQLSSRFKPRVPVIKKCID 115
T KH+EE + I +V+I + +K+ L H ++E N+L + V+ K D
Sbjct: 737 TSKHLEEFSEKFIPKKLVKIPRLQKSYAKGLITGHGIIEDYNRLYKELNDQKEVLIKFRD 796
Query: 114 ILIEKEYLERTEGEKD 67
LI L + E D
Sbjct: 797 RLIHLMKLPLLDQESD 812
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 27.1 bits (57), Expect = 3.5
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = -3
Query: 360 SGYKNKKLRVNINIPLKTELK 298
SGYK+++L ++ ++PL T +K
Sbjct: 1488 SGYKSRRLAIDYSVPLVTNVK 1508
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/52 (23%), Positives = 28/52 (53%)
Frame = -3
Query: 354 YKNKKLRVNINIPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLK 199
+++ K + +P T L ++ E T HI ++ + ++++ I+ KTL+
Sbjct: 621 FQSTKSTASFQLPGWTSLGMDLENTKLHIHQEEQRVLKSITDEIVSHHKTLR 672
>SPAC23G3.05c |||regulator of G-protein signaling
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 343
Score = 26.6 bits (56), Expect = 4.6
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -3
Query: 711 TSFQLPTELERSV--HRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKNRYTLQAS 550
TS L TE ++ H FT F S+ S L+ +Y + G LL N T+ +S
Sbjct: 64 TSTSLNTESSSTLGPHHFTRFRSASLSLEDLSTVYWPNFGPLLLEELSNEQTINSS 119
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +2
Query: 467 LMPVCCSSWRTVHEVLSLYCSSTAIWNVLACSVYLFLKQLVRSSPLLML*SQFSLR 634
L+PVCC + + +++ S + WN + + +K V +P++ F+LR
Sbjct: 1115 LLPVCCFLRFMYYFLPTVFSLSGSYWNSIFDYIKYAMKMSVVDAPIVKSFELFALR 1170
>SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 125
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 345 CSCTPSRDRQPSSRQAQPRPLDTPTVS 425
C+C P R ++ S R P LDT T+S
Sbjct: 26 CTCFPKRKKEASERSCFPF-LDTETIS 51
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 731 EPDDSTWMLKSMCRGCSELF 790
+PDD +WML C GC + F
Sbjct: 125 KPDDGSWMLG--CDGCEDWF 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,304,914
Number of Sequences: 5004
Number of extensions: 68723
Number of successful extensions: 274
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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