Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12k24
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1339 + 32760424-32760584,32762428-32764462 176 2e-44
02_05_0737 - 31328473-31330513,31331015-31331184 168 4e-42
08_01_0471 - 4147170-4149207,4150535-4150692 160 2e-39
03_06_0221 + 32458867-32459149,32460271-32460386,32460461-324608... 153 2e-37
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277... 151 5e-37
01_04_0018 + 15128174-15128316,15128445-15128544,15129573-151297... 150 2e-36
01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152... 147 1e-35
04_04_0294 + 24204563-24204748,24205531-24205620,24205980-242062... 46 5e-05
05_05_0356 - 24373879-24374469 33 0.39
03_06_0341 - 33261210-33261327,33261411-33262057,33262950-332630... 31 0.91
07_03_0276 + 16166528-16166796,16166824-16167291,16168048-161684... 30 2.1
01_07_0374 + 43144861-43144998,43145695-43145794,43146499-431466... 30 2.1
07_03_0383 - 17476271-17479228,17480466-17480750 30 2.8
03_04_0023 + 16537257-16537272,16537515-16537929,16538404-165384... 30 2.8
09_01_0083 + 1187861-1188340 29 3.7
08_02_1518 + 27644404-27645135 29 3.7
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527... 29 3.7
03_02_0930 - 12480983-12481888 29 3.7
01_06_0995 + 33661367-33661380,33661729-33661826,33662059-336622... 29 6.4
10_05_0020 - 8094412-8094653,8094692-8095017,8095632-8095798 28 8.5
02_05_0961 - 33103024-33103555,33107323-33107432,33107577-331077... 28 8.5
01_07_0325 - 42745611-42745700,42745939-42745971,42746069-427461... 28 8.5
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911... 28 8.5
>04_04_1339 + 32760424-32760584,32762428-32764462
Length = 731
Score = 176 bits (428), Expect = 2e-44
Identities = 100/276 (36%), Positives = 156/276 (56%), Gaps = 4/276 (1%)
Frame = -3
Query: 864 AKXQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTEL 685
+K + MF D+ S D ++F +++ ++ P S+Q+L++GSWP Q T +LP E+
Sbjct: 459 SKLEGMFNDLKTSHDTMQSFYANLSGDTDSPT---ISVQILTTGSWPTQPCTPCKLPPEI 515
Query: 684 ERSVHRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKNRYTLQASTFQMAVLLQYNDNTS 505
+F FY H+GR+L W NM ++ R+ L ST+QM VL+ +N
Sbjct: 516 VDISEKFRAFYLGTHNGRRLTWQTNMGNADIKATFGGRRHELNVSTYQMCVLMLFNSADG 575
Query: 504 WTVRQLEQHTGIKGDFLIQVLQIL--LKAKLLVCQEDEA-ELGENSVVDLYSGYKNKKLR 334
T +EQ TGI L + LQ L +K K ++ +E + ++ E+ + +K ++
Sbjct: 576 LTYGDIEQATGIPHADLKRCLQSLACVKGKNVLRKEPMSKDISEDDTFYYNDKFTSKLVK 635
Query: 333 VNIN-IPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLSS 157
V I + + E + E+ T + +EEDRK I+AAIVRIMK+R+ L H ++ EV QL S
Sbjct: 636 VKIGTVVAQKETEPEKLETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNSIITEVTKQLQS 695
Query: 156 RFKPRVPVIKKCIDILIEKEYLERTEGEKDTYSYLA 49
RF P VIKK I+ LIE+E+LER + ++ Y YLA
Sbjct: 696 RFLPNPVVIKKRIESLIEREFLERDKVDRKMYRYLA 731
>02_05_0737 - 31328473-31330513,31331015-31331184
Length = 736
Score = 168 bits (409), Expect = 4e-42
Identities = 99/277 (35%), Positives = 153/277 (55%), Gaps = 5/277 (1%)
Frame = -3
Query: 864 AKXQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTEL 685
+K + MF D+ S+D +F + S E + +L++GSWP Q LPTE+
Sbjct: 462 SKLEGMFTDMKTSQDTMIDF--YAKKSEELGDGPTLDVHILTTGSWPTQPCPPCNLPTEI 519
Query: 684 ERSVHRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKN-RYTLQASTFQMAVLLQYNDNT 508
+F T+Y HSGR+L W NM ++ K ++ L ST+QM VL+ +N
Sbjct: 520 LAICDKFRTYYLGTHSGRRLTWQTNMGTADIKATFGKGQKHELNVSTYQMCVLMLFNSTD 579
Query: 507 SWTVRQLEQHTGIKGDFLIQVLQIL--LKAKLLVCQEDEA-ELGENSVVDLYSGYKNKKL 337
T + +EQ T I L + LQ L +K K ++ +E + ++ E+ + +K +
Sbjct: 580 GLTYKDIEQDTAIPASDLKRCLQSLACVKGKNVLRKEPMSKDISEDDTFYFNDKFTSKLV 639
Query: 336 RVNIN-IPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLS 160
+V I + + E + E++ T + +EEDRK I+AAIVRIMK+R+ L H +V EV QL
Sbjct: 640 KVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNSIVAEVTKQLQ 699
Query: 159 SRFKPRVPVIKKCIDILIEKEYLERTEGEKDTYSYLA 49
+RF P VIKK I+ LIE+E+LER + ++ Y YLA
Sbjct: 700 ARFMPNPVVIKKRIESLIEREFLERDKADRKLYRYLA 736
>08_01_0471 - 4147170-4149207,4150535-4150692
Length = 731
Score = 160 bits (388), Expect = 2e-39
Identities = 97/278 (34%), Positives = 151/278 (54%), Gaps = 6/278 (2%)
Frame = -3
Query: 864 AKXQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTEL 685
+K + MF D+ S D + F + + P S+Q+L++GSWP Q + LP E+
Sbjct: 458 SKLEGMFNDLKTSHDTTQRFYAGTPDLGDAPT---ISVQILTTGSWPTQPCNTCNLPPEI 514
Query: 684 ERSVHRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKN--RYTLQASTFQMAVLLQYNDN 511
F FY H+GR+L W NM ++ F N ++ L ST+QM VL+ +N
Sbjct: 515 LGVSEMFRGFYLGTHNGRRLTWQTNMGTADIKA-VFGNGSKHELNVSTYQMCVLMLFNSA 573
Query: 510 TSWTVRQLEQHTGIKGDFLIQVLQ--ILLKAKLLVCQEDEA-ELGENSVVDLYSGYKNKK 340
+ R +EQ T I L + LQ L+K K ++ +E + ++ ++ + + +K
Sbjct: 574 DCLSYRDIEQTTAIPSADLKRCLQSLALVKGKNVLRKEPMSRDISDDDNFYVNDKFTSKL 633
Query: 339 LRVNIN-IPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQL 163
+V I + + E + E+ T + +EEDRK I+AAIVRIMK+R+ L H +V EV QL
Sbjct: 634 FKVKIGTVATQKESEPEKMETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNSIVTEVTKQL 693
Query: 162 SSRFKPRVPVIKKCIDILIEKEYLERTEGEKDTYSYLA 49
RF P VIKK ++ LIE+E+LER + ++ Y YLA
Sbjct: 694 QPRFMPNPVVIKKRVESLIEREFLERDKTDRKLYRYLA 731
>03_06_0221 + 32458867-32459149,32460271-32460386,32460461-32460807,
32461231-32461411,32461507-32461629,32461828-32462115,
32462536-32462688,32463068-32463169,32463260-32463313,
32463518-32463624,32463867-32463927,32464019-32464150,
32464245-32464382,32464459-32464539,32464635-32464715,
32465133-32465213,32465300-32465413
Length = 813
Score = 153 bits (370), Expect = 2e-37
Identities = 93/273 (34%), Positives = 142/273 (52%), Gaps = 2/273 (0%)
Frame = -3
Query: 861 KXQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELE 682
K + MF+DI +SK++NE+F++ ++ P I+ S+ VL++G WP +LP EL
Sbjct: 543 KLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVKLPHELN 602
Query: 681 RSVHRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKNRYTLQASTFQMAVLLQYNDNTSW 502
F FY S++SGR+L W ++ L K + L S FQ VL+ +ND
Sbjct: 603 VYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQSVVLMLFNDAQKL 662
Query: 501 TVRQLEQHTGIKGDFLIQVLQILLKAKLLVCQE--DEAELGENSVVDLYSGYKNKKLRVN 328
+ +++ TGI+ L + LQ L K+ V Q+ ++ + + R+
Sbjct: 663 SFLDIKESTGIEDKELRRTLQSLACGKVRVLQKMPKGRDVEDKDEFVFNEEFSAPLYRIK 722
Query: 327 INIPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLSSRFK 148
+N E E +T + + +DR+ + AAIVRIMKTRKTL H L+ E+ QL K
Sbjct: 723 VNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLITELFQQLKFPIK 782
Query: 147 PRVPVIKKCIDILIEKEYLERTEGEKDTYSYLA 49
P IKK I+ LI++EYLER Y+YLA
Sbjct: 783 P--SDIKKRIESLIDREYLERDRSNPQIYNYLA 813
>05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,
2775176-2775319,2775485-2775767,2775874-2775929,
2776012-2776161,2776254-2776340,2776414-2776449,
2777100-2777162,2777247-2777327,2777407-2777496,
2777690-2777767,2777855-2778058,2778139-2778186,
2778262-2778447,2779879-2779978,2780121-2780260
Length = 744
Score = 151 bits (367), Expect = 5e-37
Identities = 87/274 (31%), Positives = 143/274 (52%), Gaps = 2/274 (0%)
Frame = -3
Query: 864 AKXQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTEL 685
+K + M D+ V++D F + +A E ID ++ VL++G WP ++ LP E+
Sbjct: 475 SKMEGMVTDLTVARDHQTKFEEFVAAHQELNPGIDLAVTVLTTGFWPSYKTFDINLPAEM 534
Query: 684 ERSVHRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKNRYTLQASTFQMAVLLQYNDNTS 505
+ V F FY ++ RKL W+Y++ + L +T+Q A+LL +N +
Sbjct: 535 VKCVEVFKEFYQTRTKHRKLTWIYSLGTCNINAKFEAKTIELIVTTYQAALLLLFNGSDR 594
Query: 504 WTVRQLEQHTGIKGDFLIQVLQILLKAKLLVCQEDEAE--LGENSVVDLYSGYKNKKLRV 331
T ++ + D ++++L L AK + ++ A + N V + S + ++ R+
Sbjct: 595 LTYSEIVTQLNLSDDDVVRLLHSLSCAKYKILNKEPANRSISPNDVFEFNSKFTDRMRRI 654
Query: 330 NINIPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLSSRF 151
I +P E K E +++DR+ I A+IVRIMK+RK + HQ LV E + QLS F
Sbjct: 655 KIPLPPVDEKKKVVE----DVDKDRRYAIDASIVRIMKSRKVMGHQQLVAECVEQLSRMF 710
Query: 150 KPRVPVIKKCIDILIEKEYLERTEGEKDTYSYLA 49
KP IKK I+ LI ++YLER + + Y YLA
Sbjct: 711 KPDFKAIKKRIEDLITRDYLEREKDNANVYRYLA 744
>01_04_0018 + 15128174-15128316,15128445-15128544,15129573-15129758,
15129877-15129924,15130006-15130209,15130476-15130565,
15130667-15130747,15130827-15130889,15131794-15131832,
15131914-15132000,15132103-15132252,15132331-15132386,
15132493-15132775,15132989-15133132,15133233-15133451,
15133528-15133695,15133868-15133969
Length = 720
Score = 150 bits (363), Expect = 2e-36
Identities = 82/274 (29%), Positives = 145/274 (52%), Gaps = 2/274 (0%)
Frame = -3
Query: 864 AKXQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTEL 685
+K + M +DI ++K+ +F ++++N+ E ID ++ VL++G WP +++ LP E+
Sbjct: 451 SKMEGMLKDITLAKEHQSSFEEYVSNNPESNPLIDLNVTVLTTGYWPTYKNSDINLPLEM 510
Query: 684 ERSVHRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKNRYTLQASTFQMAVLLQYNDNTS 505
+ V F +Y S RKL W++++ ++ N +T+Q A+LL +N+
Sbjct: 511 VKCVEVFKEYYRSDKQHRKLTWIFSLGNCVVIGNFDAKPVEFVLNTYQAALLLLFNEADK 570
Query: 504 WTVRQLEQHTGIKGDFLIQVLQILLKAKLLVCQEDEAE--LGENSVVDLYSGYKNKKLRV 331
+ + + D +++L L AK + ++ + + + S + ++ R+
Sbjct: 571 LSYSDIVSQLKLSDDDAVRLLHSLSCAKYKILNKEPSNRVISPEDEFEFNSKFTDRMRRI 630
Query: 330 NINIPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLSSRF 151
+ +P E K + +K DR+ I A++VRIMK+RK L HQ LV E + QLS F
Sbjct: 631 KVPLPQIDEKKKVVDDVNK----DRRFAIDASLVRIMKSRKVLGHQQLVAECVEQLSRMF 686
Query: 150 KPRVPVIKKCIDILIEKEYLERTEGEKDTYSYLA 49
KP + +IK+ I+ LI +EYLER TY YLA
Sbjct: 687 KPDIKIIKRRIEDLISREYLERDSENAQTYKYLA 720
>01_04_0017 - 15113479-15113580,15113950-15114117,15115011-15115229,
15115303-15115446,15115558-15115840,15115936-15115991,
15116067-15116216,15116299-15116385,15116463-15116498,
15116746-15116808,15116887-15116967,15117053-15117142,
15117349-15117426,15117510-15117731,15117788-15117835,
15117948-15118133,15120910-15121009,15121107-15121246
Length = 750
Score = 147 bits (356), Expect = 1e-35
Identities = 87/274 (31%), Positives = 142/274 (51%), Gaps = 2/274 (0%)
Frame = -3
Query: 864 AKXQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTEL 685
+K + M D+ V++D F + ++ SE I ++ VL++G WP +S LP E+
Sbjct: 481 SKMEGMVTDLTVARDHQAKFEEFISTHSELNPGIALAVTVLTTGFWPSYKSFDINLPAEM 540
Query: 684 ERSVHRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKNRYTLQASTFQMAVLLQYNDNTS 505
+ V F FY ++ RKL W+Y++ + L +T+Q A+LL +N
Sbjct: 541 VKCVEVFKEFYQTRTKHRKLTWIYSLGTCNINAKFEAKTIELIVTTYQAALLLLFNGVDR 600
Query: 504 WTVRQLEQHTGIKGDFLIQVLQIL--LKAKLLVCQEDEAELGENSVVDLYSGYKNKKLRV 331
+ ++ + D ++++L L K K+L + + + N V + S + +K R+
Sbjct: 601 LSYSEIVTQLNLSDDDVVRLLHSLSCAKYKILSKEPNNRSISPNDVFEFNSKFTDKLRRL 660
Query: 330 NINIPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLSSRF 151
I +P E K E +++DR+ I A+IVRIMK+RK L HQ LV+E + QL F
Sbjct: 661 KIPLPPVDEKKKVVE----DVDKDRRYAIDASIVRIMKSRKVLGHQQLVMECVEQLGRMF 716
Query: 150 KPRVPVIKKCIDILIEKEYLERTEGEKDTYSYLA 49
KP IKK I+ LI ++YLER + + Y YLA
Sbjct: 717 KPDFKAIKKRIEDLITRDYLERDKDNPNVYRYLA 750
>04_04_0294 + 24204563-24204748,24205531-24205620,24205980-24206211,
24207180-24207457,24207576-24207647,24208054-24208295,
24208781-24209197,24209296-24209497,24209624-24209738,
24209821-24209906,24210235-24210354,24210431-24210519,
24210588-24210669,24211072-24211263,24211546-24211668
Length = 841
Score = 45.6 bits (103), Expect = 5e-05
Identities = 41/188 (21%), Positives = 76/188 (40%), Gaps = 10/188 (5%)
Frame = -3
Query: 861 KXQRMFQDIGVSKDLNENFRKHMANSSE---------QPLHIDFSIQVLSSGSWPFQQST 709
K + M D+ SK N N + ++ +S+ + H ++SS WP Q+
Sbjct: 583 KCEIMLNDLIDSKRTNSNIKTSLSKTSQTVGTVQEETELSHEVLDATIISSNFWPPIQTE 642
Query: 708 SFQLPTELERSVHRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKNRYTLQASTFQMAVL 529
+P +++ + + + + RKL W N+ +L + A++
Sbjct: 643 DLTVPASVDQLLSDYAKRFHQIKTPRKLLWKKNLGTVKLELQFEDRSMQFTVAPVHAAII 702
Query: 528 LQYNDNTSWTVRQLEQHTGIKGDFLIQVLQI-LLKAKLLVCQEDEAELGENSVVDLYSGY 352
+Q+ + SWT + L G+ D L + + K L +A+ +VVD S +
Sbjct: 703 MQFQEKPSWTSKTLATAIGVPVDSLNRKISFWTSKGVLTESVGPDADDPTFTVVDSTSDF 762
Query: 351 KNKKLRVN 328
NK VN
Sbjct: 763 -NKNSTVN 769
>05_05_0356 - 24373879-24374469
Length = 196
Score = 32.7 bits (71), Expect = 0.39
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = -2
Query: 559 AGEHVPDGGAAAVQRQHLVDGPPAGAAHRHQRGLPHTGTSNIIEGETVGV 410
A VP GAAA++R+ +G A HR +RG+P G + G V V
Sbjct: 28 AARVVPAAGAAALRRE---EGEAPAAVHRGRRGVPRIGRGGGVGGGGVTV 74
>03_06_0341 -
33261210-33261327,33261411-33262057,33262950-33263061,
33263313-33264097,33264797-33264867,33266323-33266635
Length = 681
Score = 31.5 bits (68), Expect = 0.91
Identities = 19/78 (24%), Positives = 33/78 (42%)
Frame = -2
Query: 631 QAELALQHEQGGTPHQLLQEQVHAAGEHVPDGGAAAVQRQHLVDGPPAGAAHRHQRGLPH 452
Q + Q +Q HQ Q+Q +H + +Q+QH P +HQ+ L
Sbjct: 524 QVQQQQQQQQQQFQHQQQQQQQQFQQQHQQQQQSQQLQQQHQQQQQPQQLQQQHQQQLAM 583
Query: 451 TGTSNIIEGETVGVSRGR 398
+G N + + +S G+
Sbjct: 584 SGGQNAQLAQQLAMSGGQ 601
>07_03_0276 +
16166528-16166796,16166824-16167291,16168048-16168414,
16168565-16168587,16170094-16170385
Length = 472
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 315 TVCLYSRGAFCSCTPSRDRQPSSRQAQPRPLDTPTVSPSIIFEVPV 452
T C R A SC+ R R S R + PL T T S +++ +P+
Sbjct: 405 TKCKLPRRARSSCSLRRRRWCSGRSSASLPLPTRTTSANLVVGIPM 450
>01_07_0374 +
43144861-43144998,43145695-43145794,43146499-43146651,
43147383-43150081
Length = 1029
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = -2
Query: 538 GGAAAVQRQHLVDGPPAGAAHRHQRGLPH---TGTSNIIEGETVGVSRGRG*AWRELGCR 368
G +AA+++ +VDGP + + H ++ + G ++E +T + G G R+ G R
Sbjct: 40 GHSAAIEQLEIVDGPASRSMHPFRKEMAKDLLVGELRVLERKTNALDFGEGEGGRDRGGR 99
Query: 367 SL 362
L
Sbjct: 100 ML 101
>07_03_0383 - 17476271-17479228,17480466-17480750
Length = 1080
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Frame = -3
Query: 324 NIPLKTELKVEQEATHKHIE-----EDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLS 160
N+P EL+V + K I ED K+ + +++++ +L+ H +L
Sbjct: 881 NLPSLRELEVHRNKKLKRILNLESLEDLKV-VHCLVLKVVHGVPSLRAVHSDDRNSTELP 939
Query: 159 SRFKPRVPVIKKCIDILIEKEYLERTEGEKDTY 61
+P+ P + K +DI+ +E L++ TY
Sbjct: 940 QWLQPQQPFVLKRLDIIGTEELLDKCSSASSTY 972
>03_04_0023 +
16537257-16537272,16537515-16537929,16538404-16538466,
16538604-16538607
Length = 165
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -2
Query: 619 ALQHEQGGTPHQLLQEQVHA--AGEHVPDGGAAAVQR-QHLVDGPPAGAAHRH 470
++ H+QGG Q+ +HA A E P G VQR +H G GA H H
Sbjct: 11 SIDHKQGGQQRGTPQQHLHAGHAQEQPPGHGHGQVQRHEHPAHG---GAQHAH 60
>09_01_0083 + 1187861-1188340
Length = 159
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -2
Query: 616 LQHEQGGTPHQLLQEQVHAAGEHVPDGGAAAVQRQHLVDGPPAG 485
L +QGG P ++ Q A E GG A + VDG G
Sbjct: 33 LMRDQGGAPAEIRQRSGEDAAERRQRGGGGASEEAGRVDGEEEG 76
>08_02_1518 + 27644404-27645135
Length = 243
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -3
Query: 429 KAKLLVCQEDEAELGENSVVDLYSGYKN 346
K + L CQE++ ++ E+++ DL +G KN
Sbjct: 198 KKRALFCQEEQLQVLESNIADLDTGVKN 225
>04_03_0747 -
19251617-19251781,19252377-19252502,19252606-19252716,
19252931-19253679,19254034-19254167,19254595-19254740,
19255166-19255336,19255977-19256828
Length = 817
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/62 (30%), Positives = 25/62 (40%)
Frame = +3
Query: 354 TPSRDRQPSSRQAQPRPLDTPTVSPSIIFEVPV*GSPL*CRCAAPAGGPSTRCCRCTAAA 533
+P P +R P P TPT +P+ VPV +PL R P R + A
Sbjct: 127 SPPPPPPPPARTPMPTPTPTPTPTPTRP-PVPVWAAPLPARTPTPTPSAPPRAAAPSPAG 185
Query: 534 PP 539
P
Sbjct: 186 TP 187
>03_02_0930 - 12480983-12481888
Length = 301
Score = 29.5 bits (63), Expect = 3.7
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +3
Query: 363 RDRQPSSRQAQP----RPLDTPTVSPSIIFEVPV*GSPL*CRCAAPAGGPSTRCCRC 521
R R+ S++A P RP D V P+ + P AAPAGG S CC C
Sbjct: 20 RRRKKKSKRASPASTARPSDASAVPPAAPRQPPA--------AAAPAGGLSPCCCYC 68
>01_06_0995 +
33661367-33661380,33661729-33661826,33662059-33662214,
33663307-33663926,33664020-33664090,33664176-33664427,
33664494-33664611,33664715-33664886,33664970-33665511
Length = 680
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 48 TPGSCKCPSLPRYALNIPSQSV 113
T SC LPRY LN+PS +V
Sbjct: 560 TSASCNATMLPRYHLNLPSIAV 581
>10_05_0020 - 8094412-8094653,8094692-8095017,8095632-8095798
Length = 244
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -2
Query: 262 GQKDAYTGRHSTDNENAQDPKASALSGGSPQP 167
G + A+ G H D +N+Q+P+ +A +G S +P
Sbjct: 55 GSRAAHPGSHQLDRKNSQEPQLTA-TGPSVRP 85
>02_05_0961 -
33103024-33103555,33107323-33107432,33107577-33107707,
33107779-33107870,33108210-33108337,33108658-33108723,
33108815-33108907,33108979-33109128,33109553-33109578,
33109674-33109826,33110140-33110228,33110335-33110418,
33110564-33110598,33110702-33110842,33111045-33111128,
33111208-33111215,33111590-33111746
Length = 692
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 580 LQEQVHAAGEHVPDGGAAAVQRQHLVDGPPA 488
+Q+++HA + + D GAAA + + PPA
Sbjct: 561 IQDRLHALADQITDHGAAASSPSIVPESPPA 591
>01_07_0325 -
42745611-42745700,42745939-42745971,42746069-42746182,
42746325-42746417,42746502-42746597,42746820-42746924,
42747027-42747284,42748740-42749402
Length = 483
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = -3
Query: 429 KAKLLVCQEDEAELGENSVVDLYSGY-KNKKLRVNINIPLKTELKVEQEATHKHIEEDRK 253
+A LL + +E LGE+ D + GY + + + T+L Q + E +
Sbjct: 157 EANLLTQELNELGLGEDISTDKFRGYLRQLPQEQDSPVDTSTQLDFNQLDAQNELHELYR 216
Query: 252 MLIQAAIVRIMKTRKTLKHQHLV 184
+ ++ ++ TR L H ++
Sbjct: 217 VKYYKSLQQVSGTRSKLDHDEMI 239
>01_01_1148 -
9113728-9113835,9113952-9114035,9114831-9114992,
9115120-9115224,9115584-9116216,9117412-9117496,
9118426-9118520,9119083-9119241,9119968-9119997,
9120100-9120306
Length = 555
Score = 28.3 bits (60), Expect = 8.5
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -2
Query: 532 AAAVQRQHLVDGPPAGAAHR-HQRGLPHTGTSNIIEGETVGVSRGRG*AWRE 380
A+A+ R+ V G A AA R RGL G+ + I GVS + +W E
Sbjct: 2 ASALLRKATVGGSAAAAAARWASRGLASVGSGSDIVSAAPGVSLQKARSWDE 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,792,496
Number of Sequences: 37544
Number of extensions: 509275
Number of successful extensions: 1858
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1845
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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