Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12k24
(872 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical pr... 221 5e-58
U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein. 221 5e-58
Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical pr... 199 2e-51
Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical pr... 199 2e-51
Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical pr... 199 2e-51
Z77666-5|CAB01230.1| 729|Caenorhabditis elegans Hypothetical pr... 181 5e-46
Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical pr... 176 2e-44
U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein. 174 8e-44
Z70783-1|CAA94852.2| 765|Caenorhabditis elegans Hypothetical pr... 128 4e-30
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 121 6e-28
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 121 6e-28
U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein. 118 7e-27
AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protei... 105 3e-23
L15314-1|AAF99984.2| 728|Caenorhabditis elegans Anaphase promot... 36 0.050
Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical pr... 33 0.35
AL110490-16|CAB54451.2| 922|Caenorhabditis elegans Hypothetical... 32 0.47
Z68159-7|CAA92286.1| 604|Caenorhabditis elegans Hypothetical pr... 31 0.81
U61944-5|AAB03121.2| 482|Caenorhabditis elegans Hypothetical pr... 31 1.1
AL032636-4|CAA21606.1| 123|Caenorhabditis elegans Hypothetical ... 31 1.4
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ... 30 1.9
Z75552-3|CAA99940.1| 465|Caenorhabditis elegans Hypothetical pr... 30 2.5
AC024857-3|AAK31568.6| 611|Caenorhabditis elegans Hypothetical ... 30 2.5
AC084155-5|AAK84606.1| 433|Caenorhabditis elegans Hypothetical ... 29 3.3
AC084152-4|AAR85899.1| 753|Caenorhabditis elegans Hypothetical ... 29 3.3
AC084152-3|AAK39314.2| 772|Caenorhabditis elegans Hypothetical ... 29 3.3
AC025716-1|AAK39606.1| 788|Caenorhabditis elegans Hypothetical ... 29 4.3
Z82072-1|CAB04920.2| 467|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 29 5.7
U50308-2|AAG24028.1| 791|Caenorhabditis elegans Hypothetical pr... 29 5.7
AL032636-6|CAB54421.1| 467|Caenorhabditis elegans Hypothetical ... 29 5.7
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 29 5.7
U41534-6|AAB47598.1| 375|Caenorhabditis elegans Hypothetical pr... 28 7.6
U39855-3|AAA81082.1| 467|Caenorhabditis elegans Patterned expre... 28 7.6
U11279-3|AAF99909.1| 423|Caenorhabditis elegans T box family pr... 28 7.6
>Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical protein
D2045.6 protein.
Length = 780
Score = 221 bits (540), Expect = 5e-58
Identities = 113/276 (40%), Positives = 171/276 (61%), Gaps = 4/276 (1%)
Frame = -3
Query: 864 AKXQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTEL 685
A+ +M D VSKDL +F++ A+ Q ++F++ VLSSGSWP +T LP +L
Sbjct: 506 ARLSKMVNDTQVSKDLTADFKEKKADMLGQK-SVEFNVLVLSSGSWPTFPTTPITLPQQL 564
Query: 684 ERSVHRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKNRYTLQASTFQMAVLLQYNDNTS 505
+++ F FY+ + +GR+L W+Y+ S+GE+ + F +Y A+T QM +L +N+ S
Sbjct: 565 SKTIEIFGQFYNEKFNGRRLTWVYSQSRGEITSTAFPKKYVFTATTAQMCTMLLFNEQDS 624
Query: 504 WTVRQLEQHTGIKGDFLIQVLQILLKAKLLVCQED---EAELGENSVVDLYSGYKNKKLR 334
+TV Q+ T + ++ L+K +L + E E+ + V L Y NKK+R
Sbjct: 625 YTVEQIAAATKMDEKSAPAIVGSLIKNLVLKADTELQKEDEVPMTATVSLNKAYMNKKVR 684
Query: 333 VNIN-IPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLSS 157
V+++ +K + + E K++EEDRK +I A IVRIMKTRK ++HQ L+ EV+ QLS
Sbjct: 685 VDLSKFTMKQDAVRDTENVQKNVEEDRKSVISACIVRIMKTRKRVQHQQLMTEVITQLSG 744
Query: 156 RFKPRVPVIKKCIDILIEKEYLERTEGEKDTYSYLA 49
RFKP+V +IK+CI LIEKEY+ RTEG+KD Y YLA
Sbjct: 745 RFKPKVEMIKRCIGSLIEKEYMLRTEGQKDLYEYLA 780
>U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein.
Length = 780
Score = 221 bits (540), Expect = 5e-58
Identities = 113/276 (40%), Positives = 171/276 (61%), Gaps = 4/276 (1%)
Frame = -3
Query: 864 AKXQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTEL 685
A+ +M D VSKDL +F++ A+ Q ++F++ VLSSGSWP +T LP +L
Sbjct: 506 ARLSKMVNDTQVSKDLTADFKEKKADMLGQK-SVEFNVLVLSSGSWPTFPTTPITLPQQL 564
Query: 684 ERSVHRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKNRYTLQASTFQMAVLLQYNDNTS 505
+++ F FY+ + +GR+L W+Y+ S+GE+ + F +Y A+T QM +L +N+ S
Sbjct: 565 SKTIEIFGQFYNEKFNGRRLTWVYSQSRGEITSTAFPKKYVFTATTAQMCTMLLFNEQDS 624
Query: 504 WTVRQLEQHTGIKGDFLIQVLQILLKAKLLVCQED---EAELGENSVVDLYSGYKNKKLR 334
+TV Q+ T + ++ L+K +L + E E+ + V L Y NKK+R
Sbjct: 625 YTVEQIAAATKMDEKSAPAIVGSLIKNLVLKADTELQKEDEVPMTATVSLNKAYMNKKVR 684
Query: 333 VNIN-IPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLSS 157
V+++ +K + + E K++EEDRK +I A IVRIMKTRK ++HQ L+ EV+ QLS
Sbjct: 685 VDLSKFTMKQDAVRDTENVQKNVEEDRKSVISACIVRIMKTRKRVQHQQLMTEVITQLSG 744
Query: 156 RFKPRVPVIKKCIDILIEKEYLERTEGEKDTYSYLA 49
RFKP+V +IK+CI LIEKEY+ RTEG+KD Y YLA
Sbjct: 745 RFKPKVEMIKRCIGSLIEKEYMLRTEGQKDLYEYLA 780
>Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical protein
ZK520.4c protein.
Length = 791
Score = 199 bits (485), Expect = 2e-51
Identities = 108/290 (37%), Positives = 166/290 (57%), Gaps = 18/290 (6%)
Frame = -3
Query: 864 AKXQRMFQDIGVSKDLNENFRKHMAN-SSEQP--LHIDFSIQVLSSGSWPF--------- 721
+K RMF DIG+S++L+ NF KH+A+ + QP + +L +GSWP
Sbjct: 505 SKLSRMFTDIGLSQELSNNFDKHIADIKTVQPDVKFVPTQTMILQAGSWPLNAPQLSTNS 564
Query: 720 -----QQSTSFQLPTELERSVHRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKNRYTLQ 556
Q +F LP L+ + F FY+ +H+GRKL WL+NMS+G++ +Y Q
Sbjct: 565 NNQTAQDVANFHLPRILQPVIQEFEKFYTGKHNGRKLTWLFNMSQGDVRLTYLDKQYVAQ 624
Query: 555 ASTFQMAVLLQYNDNTSWTVRQLEQHTGIKGDFLIQVLQILLKAKLLVCQEDEAELGENS 376
+QMA LL + + V+ + + G+ GD+L++ ++ +L LL C D+ L +S
Sbjct: 625 MYVYQMAALLCFERRDAILVKDIGEEIGVSGDYLLKTIRTILDVTLLTC--DDQNLTADS 682
Query: 375 VVDLYSGYKNKKLRVNINIP-LKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLK 199
+V L +K+++ + P + ++ EQEA + +DRK ++ AIVRIMKTRK LK
Sbjct: 683 LVRLNMSMTSKRMKFRLQAPQVNKAVEKEQEAVANTVSQDRKYYMECAIVRIMKTRKVLK 742
Query: 198 HQHLVVEVLNQLSSRFKPRVPVIKKCIDILIEKEYLERTEGEKDTYSYLA 49
H LV E+++Q RF P VP IKK I+ LIEK Y++RT+ + D Y YLA
Sbjct: 743 HNALVTEIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQRTD-QNDEYQYLA 791
>Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical protein
ZK520.4b protein.
Length = 774
Score = 199 bits (485), Expect = 2e-51
Identities = 108/290 (37%), Positives = 166/290 (57%), Gaps = 18/290 (6%)
Frame = -3
Query: 864 AKXQRMFQDIGVSKDLNENFRKHMAN-SSEQP--LHIDFSIQVLSSGSWPF--------- 721
+K RMF DIG+S++L+ NF KH+A+ + QP + +L +GSWP
Sbjct: 488 SKLSRMFTDIGLSQELSNNFDKHIADIKTVQPDVKFVPTQTMILQAGSWPLNAPQLSTNS 547
Query: 720 -----QQSTSFQLPTELERSVHRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKNRYTLQ 556
Q +F LP L+ + F FY+ +H+GRKL WL+NMS+G++ +Y Q
Sbjct: 548 NNQTAQDVANFHLPRILQPVIQEFEKFYTGKHNGRKLTWLFNMSQGDVRLTYLDKQYVAQ 607
Query: 555 ASTFQMAVLLQYNDNTSWTVRQLEQHTGIKGDFLIQVLQILLKAKLLVCQEDEAELGENS 376
+QMA LL + + V+ + + G+ GD+L++ ++ +L LL C D+ L +S
Sbjct: 608 MYVYQMAALLCFERRDAILVKDIGEEIGVSGDYLLKTIRTILDVTLLTC--DDQNLTADS 665
Query: 375 VVDLYSGYKNKKLRVNINIP-LKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLK 199
+V L +K+++ + P + ++ EQEA + +DRK ++ AIVRIMKTRK LK
Sbjct: 666 LVRLNMSMTSKRMKFRLQAPQVNKAVEKEQEAVANTVSQDRKYYMECAIVRIMKTRKVLK 725
Query: 198 HQHLVVEVLNQLSSRFKPRVPVIKKCIDILIEKEYLERTEGEKDTYSYLA 49
H LV E+++Q RF P VP IKK I+ LIEK Y++RT+ + D Y YLA
Sbjct: 726 HNALVTEIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQRTD-QNDEYQYLA 774
>Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical protein
ZK520.4a protein.
Length = 850
Score = 199 bits (485), Expect = 2e-51
Identities = 108/290 (37%), Positives = 166/290 (57%), Gaps = 18/290 (6%)
Frame = -3
Query: 864 AKXQRMFQDIGVSKDLNENFRKHMAN-SSEQP--LHIDFSIQVLSSGSWPF--------- 721
+K RMF DIG+S++L+ NF KH+A+ + QP + +L +GSWP
Sbjct: 564 SKLSRMFTDIGLSQELSNNFDKHIADIKTVQPDVKFVPTQTMILQAGSWPLNAPQLSTNS 623
Query: 720 -----QQSTSFQLPTELERSVHRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKNRYTLQ 556
Q +F LP L+ + F FY+ +H+GRKL WL+NMS+G++ +Y Q
Sbjct: 624 NNQTAQDVANFHLPRILQPVIQEFEKFYTGKHNGRKLTWLFNMSQGDVRLTYLDKQYVAQ 683
Query: 555 ASTFQMAVLLQYNDNTSWTVRQLEQHTGIKGDFLIQVLQILLKAKLLVCQEDEAELGENS 376
+QMA LL + + V+ + + G+ GD+L++ ++ +L LL C D+ L +S
Sbjct: 684 MYVYQMAALLCFERRDAILVKDIGEEIGVSGDYLLKTIRTILDVTLLTC--DDQNLTADS 741
Query: 375 VVDLYSGYKNKKLRVNINIP-LKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLK 199
+V L +K+++ + P + ++ EQEA + +DRK ++ AIVRIMKTRK LK
Sbjct: 742 LVRLNMSMTSKRMKFRLQAPQVNKAVEKEQEAVANTVSQDRKYYMECAIVRIMKTRKVLK 801
Query: 198 HQHLVVEVLNQLSSRFKPRVPVIKKCIDILIEKEYLERTEGEKDTYSYLA 49
H LV E+++Q RF P VP IKK I+ LIEK Y++RT+ + D Y YLA
Sbjct: 802 HNALVTEIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQRTD-QNDEYQYLA 850
>Z77666-5|CAB01230.1| 729|Caenorhabditis elegans Hypothetical protein
K08E7.7 protein.
Length = 729
Score = 181 bits (441), Expect = 5e-46
Identities = 98/273 (35%), Positives = 156/273 (57%), Gaps = 5/273 (1%)
Frame = -3
Query: 852 RMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELERSV 673
+M +D +SKDL F+ S IDF++ + ++G+WP LP EL +
Sbjct: 462 KMVEDAKISKDLTTEFKDIKTEKS-----IDFNVILQTTGAWPSLDQIKIILPRELSTIL 516
Query: 672 HRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKNRYTLQASTFQMAVLLQYNDNTSWTVR 493
F TFY++ H+GR+LNW Y+ +GE+ + F+ +Y + Q+ L +N+ S+T+
Sbjct: 517 KEFDTFYNASHNGRRLNWAYSQCRGEVNSKAFEKKYVFIVTASQLCTLYLFNEQDSFTIE 576
Query: 492 QLE---QHTGIKGDFLIQVLQILLKAKLLVCQEDEAE-LGENSVVDLYSGYKNKKLRVNI 325
Q+ + T ++ L ++ L+V + +E + ++VV L + Y NKK+RV++
Sbjct: 577 QISKAIEMTAKSTSAIVGSLNPVIDPVLVVDKGNEKDGYPPDAVVSLNTKYANKKVRVDL 636
Query: 324 NIPLK-TELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLSSRFK 148
+K E +A +E DRK I+A IVRIMKTRK+L H L+ E+++QL SRF
Sbjct: 637 TTAIKKATADRETDAVQNTVESDRKYEIKACIVRIMKTRKSLTHTLLINEIISQLKSRFT 696
Query: 147 PRVPVIKKCIDILIEKEYLERTEGEKDTYSYLA 49
P V +IK CI+ILIE+ Y+ R+E E + Y YLA
Sbjct: 697 PNVQMIKICIEILIEQLYIRRSENEHNVYEYLA 729
>Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical protein
ZK520.4d protein.
Length = 743
Score = 176 bits (428), Expect = 2e-44
Identities = 100/275 (36%), Positives = 154/275 (56%), Gaps = 3/275 (1%)
Frame = -3
Query: 864 AKXQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTEL 685
+K RMF DIG+S++L+ NF KH+A+ + F P Q L
Sbjct: 488 SKLSRMFTDIGLSQELSNNFDKHIADIKTVQPDVKFV---------PTQTMI-------L 531
Query: 684 ERSVHRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKNRYTLQASTFQMAVLLQYNDNTS 505
+ + F FY+ +H+GRKL WL+NMS+G++ +Y Q +QMA LL + +
Sbjct: 532 QPVIQEFEKFYTGKHNGRKLTWLFNMSQGDVRLTYLDKQYVAQMYVYQMAALLCFERRDA 591
Query: 504 WTVRQLEQHTGIKGDFLIQVLQILLKAKLLVCQEDEAELGENSVVDLYSGYKNKKLRVNI 325
V+ + + G+ GD+L++ ++ +L LL C D+ L +S+V L +K+++ +
Sbjct: 592 ILVKDIGEEIGVSGDYLLKTIRTILDVTLLTC--DDQNLTADSLVRLNMSMTSKRMKFRL 649
Query: 324 NIP-LKTELKVEQEATHK--HIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLSSR 154
P + ++ EQEA + +DRK ++ AIVRIMKTRK LKH LV E+++Q R
Sbjct: 650 QAPQVNKAVEKEQEAVANTFQVSQDRKYYMECAIVRIMKTRKVLKHNALVTEIMDQTKGR 709
Query: 153 FKPRVPVIKKCIDILIEKEYLERTEGEKDTYSYLA 49
F P VP IKK I+ LIEK Y++RT+ + D Y YLA
Sbjct: 710 FSPDVPFIKKSIEDLIEKMYIQRTD-QNDEYQYLA 743
>U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein.
Length = 743
Score = 174 bits (423), Expect = 8e-44
Identities = 99/275 (36%), Positives = 154/275 (56%), Gaps = 3/275 (1%)
Frame = -3
Query: 864 AKXQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTEL 685
+K RMF DIG+S++L+ NF KH+A+ + F P Q L
Sbjct: 488 SKLSRMFTDIGLSQELSNNFDKHIADIKTVQPDVKFV---------PTQTMI-------L 531
Query: 684 ERSVHRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKNRYTLQASTFQMAVLLQYNDNTS 505
+ + F FY+ +H+GRKL WL+NMS+G++ ++ Q +QMA LL + +
Sbjct: 532 QPVIQEFEKFYTGKHNGRKLTWLFNMSQGDVRLTYLDKQHVAQMYVYQMAALLCFERRDA 591
Query: 504 WTVRQLEQHTGIKGDFLIQVLQILLKAKLLVCQEDEAELGENSVVDLYSGYKNKKLRVNI 325
V+ + + G+ GD+L++ ++ +L LL C D+ L +S+V L +K+++ +
Sbjct: 592 ILVKDIGEEIGVSGDYLLKTIRTILDVTLLTC--DDQNLTADSLVRLNMSMTSKRMKFRL 649
Query: 324 NIP-LKTELKVEQEATHK--HIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLSSR 154
P + ++ EQEA + +DRK ++ AIVRIMKTRK LKH LV E+++Q R
Sbjct: 650 QAPQVNKAVEKEQEAVANTFQVSQDRKYYMECAIVRIMKTRKVLKHNALVTEIMDQTKGR 709
Query: 153 FKPRVPVIKKCIDILIEKEYLERTEGEKDTYSYLA 49
F P VP IKK I+ LIEK Y++RT+ + D Y YLA
Sbjct: 710 FSPDVPFIKKSIEDLIEKMYIQRTD-QNDEYQYLA 743
>Z70783-1|CAA94852.2| 765|Caenorhabditis elegans Hypothetical protein
ZK856.1 protein.
Length = 765
Score = 128 bits (310), Expect = 4e-30
Identities = 88/294 (29%), Positives = 149/294 (50%), Gaps = 23/294 (7%)
Frame = -3
Query: 861 KXQRMFQDIGVSKDLNENFRKHMANSSEQPLHID-FSIQVLSSGSWPF--QQSTSFQLPT 691
K RM QDI ++KD+N +F+K + ++ D +++VL+ G+W + F LP
Sbjct: 472 KLSRMLQDIELNKDMNSSFKKALTGTNNNKSIADSINMKVLNGGAWGRGGSERIRFSLPR 531
Query: 690 ELERSVHRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFK-NRYTLQASTFQMAVLLQYND 514
ELE V FY QH+GRKL W+++ S G ++ R+ L+ +TFQMAVL +ND
Sbjct: 532 ELEDFVPEMEAFYKKQHNGRKLCWMHHWSSGTMVFGTANGGRFDLECTTFQMAVLFCFND 591
Query: 513 --NTSWTVRQLEQHTGIKGDFLIQVLQIL-----LKAKLLVCQEDEAELGENSVVD---- 367
+ ++ L T + L + L L ++ ++L+C + D
Sbjct: 592 RAHDKISLETLRLATELPDAELNRTLLSLVAYPKMRYQILLCDVPSTTVTARDFTDSTKF 651
Query: 366 --------LYSGYKNKKLRVNINIPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTR 211
+ +G ++ +VN+ L+ L+ E H+ I R++ +Q IV+I+KTR
Sbjct: 652 LINHDFNVVKNGKSQQRGKVNLIGRLQLSLEANAEKEHESIVALRELRVQEGIVKILKTR 711
Query: 210 KTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDILIEKEYLERTEGEKDTYSYLA 49
KT L +E++ L F P +IK+ ID LIE +Y+ER + +T+ Y++
Sbjct: 712 KTYTLAQLTMELVEILKPLFIPNRKIIKEQIDWLIENKYMERRADDINTFVYIS 765
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 121 bits (292), Expect = 6e-28
Identities = 84/286 (29%), Positives = 152/286 (53%), Gaps = 15/286 (5%)
Frame = -3
Query: 861 KXQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELE 682
K + MF+D+ S++ F +++ + +++ + F+ +V++ WP + +P E+
Sbjct: 524 KLEGMFKDMDASENYGRLFNQYLEHMNKEKAN--FTARVITPEYWPTYDTYEINIPKEMR 581
Query: 681 RSVHRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKN--RYTLQASTFQMAVLLQYNDNT 508
++ + FY QH R + W + ++ +++ F+ + L A+ +Q +LL +N
Sbjct: 582 DTLTDYQDFYRVQHGNRNVKWHHGLASA-VISASFRPGCKKELIATMYQTVILLLFNKCE 640
Query: 507 SWTVRQLEQHTGIKGDFLIQVLQILL--KAKLLVCQEDE---AELGENSVVDLY------ 361
+WTV ++ +HT I +++ + LL + K V Q E +E E +V +L
Sbjct: 641 TWTVAEIVEHTKILEIEVVKNVLALLGGRDKPKVLQRVEGGGSEKKEGTVENLKNEKFVV 700
Query: 360 -SGYKNKKLRVNI-NIPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHL 187
S + K+ RV I + +KT ++ E + + + DR+ I AA+VRIMK RK L HQ L
Sbjct: 701 NSKFTEKRCRVRIAQVNIKTAVE-ETKEVKEEVNSDRQYKIDAAVVRIMKARKQLNHQTL 759
Query: 186 VVEVLNQLSSRFKPRVPVIKKCIDILIEKEYLERTEGEKDTYSYLA 49
+ E+L QL RF IKK ++ LIE+EY+ R E +Y+Y+A
Sbjct: 760 MTELLQQL--RFPVSTADIKKRLESLIEREYISRDPEEASSYNYVA 803
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 121 bits (292), Expect = 6e-28
Identities = 84/286 (29%), Positives = 152/286 (53%), Gaps = 15/286 (5%)
Frame = -3
Query: 861 KXQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELE 682
K + MF+D+ S++ F +++ + +++ + F+ +V++ WP + +P E+
Sbjct: 561 KLEGMFKDMDASENYGRLFNQYLEHMNKEKAN--FTARVITPEYWPTYDTYEINIPKEMR 618
Query: 681 RSVHRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKN--RYTLQASTFQMAVLLQYNDNT 508
++ + FY QH R + W + ++ +++ F+ + L A+ +Q +LL +N
Sbjct: 619 DTLTDYQDFYRVQHGNRNVKWHHGLASA-VISASFRPGCKKELIATMYQTVILLLFNKCE 677
Query: 507 SWTVRQLEQHTGIKGDFLIQVLQILL--KAKLLVCQEDE---AELGENSVVDLY------ 361
+WTV ++ +HT I +++ + LL + K V Q E +E E +V +L
Sbjct: 678 TWTVAEIVEHTKILEIEVVKNVLALLGGRDKPKVLQRVEGGGSEKKEGTVENLKNEKFVV 737
Query: 360 -SGYKNKKLRVNI-NIPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHL 187
S + K+ RV I + +KT ++ E + + + DR+ I AA+VRIMK RK L HQ L
Sbjct: 738 NSKFTEKRCRVRIAQVNIKTAVE-ETKEVKEEVNSDRQYKIDAAVVRIMKARKQLNHQTL 796
Query: 186 VVEVLNQLSSRFKPRVPVIKKCIDILIEKEYLERTEGEKDTYSYLA 49
+ E+L QL RF IKK ++ LIE+EY+ R E +Y+Y+A
Sbjct: 797 MTELLQQL--RFPVSTADIKKRLESLIEREYISRDPEEASSYNYVA 840
>U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein.
Length = 780
Score = 118 bits (283), Expect = 7e-27
Identities = 100/309 (32%), Positives = 150/309 (48%), Gaps = 38/309 (12%)
Frame = -3
Query: 861 KXQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELE 682
K + MF+D + L +FR + + ID S++VL++G WP Q LP EL
Sbjct: 475 KLENMFRDKELWLTLATSFRD-WREAQPTKMSIDISLRVLTAGVWPTVQCNPVVLPQELS 533
Query: 681 RSVHRFTTFYSSQHSGRK--LNWLY---------------NMSK----------GELLTN 583
+ FT +Y+ +H+GRK +N L +MS GE +
Sbjct: 534 VAYEMFTQYYTEKHTGRKLTINTLLGNADVKATFYPPPKASMSNEENGPGPSGSGESMKE 593
Query: 582 CFKNRYTLQASTFQMAVLLQYNDNTSWTVR---QLEQHTGIKGDFLIQVLQILLKAK--- 421
LQ +T QM +LLQ N + + + QL I L + LQ L K
Sbjct: 594 RKPEHKILQVNTHQMIILLQLNHHNRISCQHEQQLMDELKIPERELKRNLQSLALGKASQ 653
Query: 420 -LLVCQ---EDEAELGENSVVDLYSGYKNKKLRVNINIPL-KTELKVEQEATHKHIEEDR 256
+LV + +D ++ + V+ +++K RV + + K E + E T + +E+DR
Sbjct: 654 RILVRKNKGKDAIDMSDEFAVN--DNFQSKLTRVKVQMVTGKVESEPEIRETRQKVEDDR 711
Query: 255 KMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDILIEKEYLERTEG 76
K+ ++AAIVRIMK RK L H +LV EV QL RF P +IK+ I+ LIE+EYL R E
Sbjct: 712 KLEVEAAIVRIMKARKKLNHNNLVAEVTQQLRHRFMPSPIIIKQRIETLIEREYLARDEH 771
Query: 75 EKDTYSYLA 49
+ Y Y+A
Sbjct: 772 DHRAYQYIA 780
>AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protein 3
protein.
Length = 777
Score = 105 bits (253), Expect = 3e-23
Identities = 94/306 (30%), Positives = 146/306 (47%), Gaps = 35/306 (11%)
Frame = -3
Query: 861 KXQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQ----------S 712
K + MF+D + L +FR + + ID S++VL++G WP Q S
Sbjct: 475 KLENMFRDKELWLTLATSFRD-WREAQPTKMSIDISLRVLTAGVWPTVQCNPVVLPQELS 533
Query: 711 TSFQLPTELERSVH---RFT------------TFYSSQHSG--RKLNWLYNMSKGELLTN 583
++++ T+ H + T TFY + + N S GE +
Sbjct: 534 VAYEMFTQYYTEKHTGRKLTINTLLGNADVKATFYPPPKASMSNEENGPGPSSSGESMKE 593
Query: 582 CFKNRYTLQASTFQMAVLLQYNDNTSWTVRQLEQHTGIKGDFLIQVLQILLKAK----LL 415
LQ +T QM +LLQ+N + + +QL I L + LQ L K +L
Sbjct: 594 RKPEHKILQVNTHQMIILLQFNHHNRISCQQLMDELKIPERELKRNLQSLALGKASQRIL 653
Query: 414 VCQ---EDEAELGENSVVDLYSGYKNKKLRVNINIPL-KTELKVEQEATHKHIEEDRKML 247
V + +D ++ + V+ +++K RV + + K E + E T + +E+DRK+
Sbjct: 654 VRKNKGKDAIDMSDEFAVN--DNFQSKLTRVKVQMVTGKVESEPEIRETRQKVEDDRKLE 711
Query: 246 IQAAIVRIMKTRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDILIEKEYLERTEGEKD 67
++AAIVRIMK RK L H +LV EV QL RF P +IK+ I+ LIE+EYL R E +
Sbjct: 712 VEAAIVRIMKARKKLNHNNLVAEVTQQLRHRFMPSPIIIKQRIETLIEREYLARDEHDHR 771
Query: 66 TYSYLA 49
Y Y+A
Sbjct: 772 AYQYIA 777
>L15314-1|AAF99984.2| 728|Caenorhabditis elegans Anaphase promoting
complex; seealso mat protein 2 protein.
Length = 728
Score = 35.5 bits (78), Expect = 0.050
Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 5/132 (3%)
Frame = -3
Query: 849 MFQDIGVSKDLNENFR---KHMANSSEQPLHIDFSIQVLSSGSWPFQQS--TSFQLPTEL 685
M +D+ S D+++ F + A + + P+ I S ++SS WP ++ T +P L
Sbjct: 457 MLRDVIHSLDIDKKFEDMSERSAGNYDVPI-IPISACIISSHYWPKLETEKTEALMPQPL 515
Query: 684 ERSVHRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKNRYTLQASTFQMAVLLQYNDNTS 505
+ ++ + Y RKL WL ++ E+ N +L + + +
Sbjct: 516 QAAMDVYQETYLDVKRDRKLEWLRSVGCVEVSINIDGVEVDRTIPNMYALLLFLFLEKET 575
Query: 504 WTVRQLEQHTGI 469
WT ++ + G+
Sbjct: 576 WTTAEVVEKMGM 587
>Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical
protein F46F3.4 protein.
Length = 769
Score = 32.7 bits (71), Expect = 0.35
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -3
Query: 288 EATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLSSR--FKPRVPV 133
++ +KH+EE + AA +++ RK +HQ L+ NQ+S++ +PR V
Sbjct: 213 QSLNKHLEEMYRRRQTAAAAALVEQRKMQQHQILLARAANQVSTQEVIRPRASV 266
>AL110490-16|CAB54451.2| 922|Caenorhabditis elegans Hypothetical
protein Y48B6A.11 protein.
Length = 922
Score = 32.3 bits (70), Expect = 0.47
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +1
Query: 475 GVLLQLADRPRGVVVVLQQHRH---LERARLQRVPVLEAVGEEFPLAHVVEPVQ--LAPG 639
G + ++ D PRGVV++ +H H + + Q+ VG+ + VVEP Q G
Sbjct: 763 GFVCEVRDYPRGVVMICHKHEHSYLVNKTTQQQAYTNVKVGDFVFVEDVVEPPQKLFTRG 822
Query: 640 VLRRVERGEPV 672
+ R ++ E V
Sbjct: 823 AIVRADKKETV 833
>Z68159-7|CAA92286.1| 604|Caenorhabditis elegans Hypothetical
protein C33D9.8 protein.
Length = 604
Score = 31.5 bits (68), Expect = 0.81
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = -3
Query: 387 GENSVVDLYSGYKNKKLRVNINIPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRK 208
GE+ + N K ++N LK EL + A HK I +D++ I+ RIMK +
Sbjct: 397 GESEQTLIEKVKNNSKAVASLNAQLKNELSYTK-AVHKRILKDKEQCIEELENRIMKL-E 454
Query: 207 TLK 199
TLK
Sbjct: 455 TLK 457
>U61944-5|AAB03121.2| 482|Caenorhabditis elegans Hypothetical
protein T12E12.1 protein.
Length = 482
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = -3
Query: 714 STSFQLPTELERSVHRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKNRYTLQASTFQMA 535
S S ++ EL + + ++H+G ++W Y LLT C RYTLQ T+ A
Sbjct: 366 SKSLKMEEELRDKIRKKIDDKVNEHNGTWIDWQYLHKSVSLLTKC---RYTLQ-YTYPFA 421
Query: 534 VLL 526
L
Sbjct: 422 YFL 424
>AL032636-4|CAA21606.1| 123|Caenorhabditis elegans Hypothetical
protein Y40B1B.7 protein.
Length = 123
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = -3
Query: 312 KTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQ 193
K E KVEQE + +E +RK I I +I K +KT K Q
Sbjct: 72 KKERKVEQEK--RRLENERKAEIVQKITKIHKLKKTKKRQ 109
>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
protein Y11D7A.14 protein.
Length = 1464
Score = 30.3 bits (65), Expect = 1.9
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Frame = -3
Query: 351 KNKK-LRVNINIPLKTEL-KVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVE 178
KN++ L+ N+ + + + K E+ K +EE K + + + + RKT++ E
Sbjct: 850 KNEEALKENLKLSMLLDREKSEKVKVQKELEEVEKQGREKLLEKEREFRKTMEEMEQNEE 909
Query: 177 VLNQLSSRFKPRVPVIKKCIDILIEKE-YLERTEGEK 70
+ N L ++ + + K D+L E E +E+ EK
Sbjct: 910 IFNVLERKYNEQHKKVMKMNDVLREYERKIEQLNMEK 946
>Z75552-3|CAA99940.1| 465|Caenorhabditis elegans Hypothetical
protein W04D2.3 protein.
Length = 465
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = -3
Query: 714 STSFQLPTELERS---VHRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKNRYTL 559
S++ + +ER VH+ TF + Q+S ++W+Y +K N F Y +
Sbjct: 166 SSALRFQANMERKKVQVHKTVTFLNFQYSSGFISWIYLFTKVLYFLNVFAQLYLM 220
>AC024857-3|AAK31568.6| 611|Caenorhabditis elegans Hypothetical
protein Y71G12A.2 protein.
Length = 611
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +2
Query: 479 CCSSWRTVHEVLSLYCSSTAIWNVLACSVYLFLKQLVRSSPLLML*SQFSLRPE 640
CC +W TV E LS+ + ++ V L L R L +L Q L PE
Sbjct: 404 CCWTWWTVSESLSICQLLCDVSHLNVAPVILSRLHLARFDALFVLAKQLKLNPE 457
>AC084155-5|AAK84606.1| 433|Caenorhabditis elegans Hypothetical
protein Y45G5AM.7 protein.
Length = 433
Score = 29.5 bits (63), Expect = 3.3
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Frame = -3
Query: 486 EQHTGIKGDFLIQVLQILLKAKLLVCQEDEAELGENSVVDLYSGYKNKKLRVNINIPLKT 307
E+ D + + +L K K+ + +E E L E ++V+ K + L+ K
Sbjct: 200 ERKISNSSDEIFSLQDLLGKTKVQLEEETEKVLQERTIVE---NLKAQFLKERKESTEKI 256
Query: 306 EL-KVEQEATHKHIEEDRKMLIQAAIVRI----MKTRKTLKHQHLVVEVLNQLSSRFKPR 142
EL + E E K IEED + Q + K T+ HQ+ V+E L Q + +
Sbjct: 257 ELIQKEAEDYRKRIEEDIRNRQQRHKKEVDAHQEKFSATVNHQNAVIEELTQTVKQKQSE 316
Query: 141 VPVIK 127
+ +K
Sbjct: 317 IAELK 321
>AC084152-4|AAR85899.1| 753|Caenorhabditis elegans Hypothetical
protein Y102A11A.2b protein.
Length = 753
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -3
Query: 807 FRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELERSVHRFTTFY 652
+ + ++S+EQP + S S FQ S S Q P E RS+H ++ +Y
Sbjct: 119 YNSYASHSNEQPTTVSSS-----SARQSFQDSASMQNPAESTRSIH-YSRYY 164
>AC084152-3|AAK39314.2| 772|Caenorhabditis elegans Hypothetical
protein Y102A11A.2a protein.
Length = 772
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -3
Query: 807 FRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELERSVHRFTTFY 652
+ + ++S+EQP + S S FQ S S Q P E RS+H ++ +Y
Sbjct: 119 YNSYASHSNEQPTTVSSS-----SARQSFQDSASMQNPAESTRSIH-YSRYY 164
>AC025716-1|AAK39606.1| 788|Caenorhabditis elegans Hypothetical
protein Y39G10AR.11 protein.
Length = 788
Score = 29.1 bits (62), Expect = 4.3
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Frame = -3
Query: 384 ENSVVDLYSGYKNKKLRVNINIPLKTELKVEQEATHKHIEEDRKMLIQAA-IVRIMK-TR 211
E V +L K+ +L + + + EL+ + TH +EE K L A +R+M+ T
Sbjct: 18 ERRVTELQDENKSLRLTLALRTDCEHELERVRNETHPGVEELEKKLASAENEIRVMESTN 77
Query: 210 KTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDILIEKEYLERTEGEKDTYS 58
K L + +QL + R ++K ++ E E +E + Y+
Sbjct: 78 KEL--MATLATTRDQLGKMLRERNQLVKDVDELHEEIEKMESLYNKPADYA 126
>Z82072-1|CAB04920.2| 467|Caenorhabditis elegans Hypothetical
protein W05H12.1 protein.
Length = 467
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -3
Query: 408 QEDEAELGENSV-VDLYSGYKNKKLRVNINIPLKTELKVEQEATHKHIEEDRKMLIQAAI 232
+EDE E E V S K K R+ KT K E+EA + +EE+++ AA+
Sbjct: 345 EEDEEESEEKEEKVKGKSNQKTVKERIRAEEARKTVEKEEEEAEEEAVEEEKEEKAAAAV 404
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
T28C6.9 protein.
Length = 1861
Score = 28.7 bits (61), Expect = 5.7
Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Frame = -3
Query: 462 DFLIQVLQILLKAKLLVCQ--EDEAELGENSVVDLYSGYKNKKLRVNINIPLKTEL-KVE 292
+F +Q+ + K ++L + E EA+L + D N +L + L+ +L +
Sbjct: 1694 EFAVQMDKYREKCEVLTAKIAELEAQLQNPAEEDQQQKTSNVEL-----VKLRQQLANAQ 1748
Query: 291 QEATHKHIE-EDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLSSRFKPRVPV 133
Q+ +++ DR+ LI +I + KT++ HL ++ + + R PRVP+
Sbjct: 1749 QDMRVQNLTISDREGLIAEYRHQIAEQTKTIEELHLKLKTFSAAARRTSPRVPM 1802
>U50308-2|AAG24028.1| 791|Caenorhabditis elegans Hypothetical
protein F07C3.3 protein.
Length = 791
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -3
Query: 222 MKTRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDILIEKEYLE-RTEGEKDTYSY 55
M +KTL+ V+ N KP VP+ KK + +K E KD YSY
Sbjct: 233 MFIKKTLEVNAFVINCYNHSKKAVKPEVPIWKKPFPGMKDKNLPEDEILRVKDLYSY 289
>AL032636-6|CAB54421.1| 467|Caenorhabditis elegans Hypothetical
protein W05H12.1 protein.
Length = 467
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -3
Query: 408 QEDEAELGENSV-VDLYSGYKNKKLRVNINIPLKTELKVEQEATHKHIEEDRKMLIQAAI 232
+EDE E E V S K K R+ KT K E+EA + +EE+++ AA+
Sbjct: 345 EEDEEESEEKEEKVKGKSNQKTVKERIRAEEARKTVEKEEEEAEEEAVEEEKEEKAAAAV 404
>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
protein H11E01.3 protein.
Length = 1464
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -2
Query: 604 QGGTPHQLLQEQVHAAGEHVPDGGAAAVQRQHLVDGPPAGAAHRHQRGLPHT 449
+G P Q H++ EH+ + + V Q V P A H+ +PH+
Sbjct: 694 RGEVPQSPSSNQFHSS-EHIEEARQSPVTNQESVHSPHASEHFEHREVVPHS 744
>U41534-6|AAB47598.1| 375|Caenorhabditis elegans Hypothetical
protein C16A3.4 protein.
Length = 375
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = -3
Query: 183 VEVLNQLSSRFKPRVPVIKKCIDILIEKEYLERTEGEKDTYSYLA*SRHSQEER 22
+E+ N+ ++ F P PV+ ++ L K + + E ++A +H + E+
Sbjct: 47 IELFNEKAASFNPTKPVVAASVEPLYCKACRKSIKSENAMTDHVASKKHKENEK 100
>U39855-3|AAA81082.1| 467|Caenorhabditis elegans Patterned
expression site protein 8 protein.
Length = 467
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/58 (27%), Positives = 21/58 (36%)
Frame = -2
Query: 559 AGEHVPDGGAAAVQRQHLVDGPPAGAAHRHQRGLPHTGTSNIIEGETVGVSRGRG*AW 386
AG +P G ++ PP G H PH ++ VG G G AW
Sbjct: 144 AGYAMPMGAYPIPIPPNIYPTPPFGGFHMPPHSPPHVQPPPVVNPGAVGTYTGYGGAW 201
>U11279-3|AAF99909.1| 423|Caenorhabditis elegans T box family
protein 2 protein.
Length = 423
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 306 PSSTVCLYSRGAFCSCTPSRDRQPSSRQAQPRPLDTPTVS 425
P T L + S + S D +P+ ++ +P P TPT S
Sbjct: 267 PGKTASLPTHSPHPSESNSEDDEPTLKKCKPEPSQTPTTS 306
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,695,644
Number of Sequences: 27780
Number of extensions: 415063
Number of successful extensions: 1675
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1656
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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