Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12k23
         (807 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   422   e-120
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   422   e-120
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   4.4  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  422 bits (1039), Expect = e-120
 Identities = 195/237 (82%), Positives = 211/237 (89%)
 Frame = -1

Query: 807 PKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXX 628
           PKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF        
Sbjct: 64  PKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGG 123

Query: 627 XXXATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSV 448
              ATSLCFVYPLDFARTRLAADVGK  G+REF+GLGNC++KIFK+DG+ GLYRGFGVSV
Sbjct: 124 AAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSV 183

Query: 447 QGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQ 268
           QGIIIYRA+YFGFYDTARGMLPDPK TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQ
Sbjct: 184 QGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQ 243

Query: 267 SGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 97
           SGRAKS+ILYK+T+HCWATI KTEG +AFFKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 244 SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 6/129 (4%)
 Frame = -1

Query: 540 QREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPD--PKNT 367
           ++ + G+ +C  +I K  G +  +RG   +V      +A  F F D  + +      KNT
Sbjct: 50  EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNT 109

Query: 366 PIVISWAIAQTVTTVAGIIS----YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKT 199
             +  +         AG  S    YP D  R R+    G+A  +  +    +C   I K 
Sbjct: 110 QFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKA 169

Query: 198 EGTSAFFKG 172
           +G +  ++G
Sbjct: 170 DGITGLYRG 178



 Score = 31.9 bits (69), Expect = 0.007
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -1

Query: 348 AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAFFK 175
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 174 GAFSNVLR 151
           G  +NV+R
Sbjct: 75  GNLANVIR 82


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  422 bits (1039), Expect = e-120
 Identities = 195/237 (82%), Positives = 211/237 (89%)
 Frame = -1

Query: 807 PKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXX 628
           PKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF        
Sbjct: 64  PKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGG 123

Query: 627 XXXATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSV 448
              ATSLCFVYPLDFARTRLAADVGK  G+REF+GLGNC++KIFK+DG+ GLYRGFGVSV
Sbjct: 124 AAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSV 183

Query: 447 QGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQ 268
           QGIIIYRA+YFGFYDTARGMLPDPK TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQ
Sbjct: 184 QGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQ 243

Query: 267 SGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 97
           SGRAKS+ILYK+T+HCWATI KTEG +AFFKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 244 SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 6/129 (4%)
 Frame = -1

Query: 540 QREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPD--PKNT 367
           ++ + G+ +C  +I K  G +  +RG   +V      +A  F F D  + +      KNT
Sbjct: 50  EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNT 109

Query: 366 PIVISWAIAQTVTTVAGIIS----YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKT 199
             +  +         AG  S    YP D  R R+    G+A  +  +    +C   I K 
Sbjct: 110 QFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKA 169

Query: 198 EGTSAFFKG 172
           +G +  ++G
Sbjct: 170 DGITGLYRG 178



 Score = 31.9 bits (69), Expect = 0.007
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -1

Query: 348 AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAFFK 175
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 174 GAFSNVLR 151
           G  +NV+R
Sbjct: 75  GNLANVIR 82


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 107 LISSYKTSTKAPPVPLRTLEKAPL 178
           L++++KT T+ P    + LEK P+
Sbjct: 134 LVNAFKTLTQEPKNTNKFLEKGPV 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,586
Number of Sequences: 438
Number of extensions: 3924
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)