Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12k22
         (328 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0175 - 2509014-2509064,2509389-2509490,2509603-2509729,250...    29   0.65 
03_01_0167 + 1374578-1375243,1375895-1376277,1377947-1378007,137...    28   2.0  
10_02_0144 + 5815403-5815520,5815551-5816314                           27   4.6  
02_04_0300 + 21784634-21784691,21784784-21784893,21787486-217877...    26   8.0  

>09_01_0175 - 2509014-2509064,2509389-2509490,2509603-2509729,
            2509852-2511564,2512335-2512424,2512533-2512801,
            2513118-2513687,2513703-2514065
          Length = 1094

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 18/76 (23%), Positives = 36/76 (47%)
 Frame = +2

Query: 44   RYEKGLRQYTHAPDSVVKRGNDKYXTTYEQTRLGDGSTSKMMSFVFQN*TGFTSRILRVK 223
            R E+ L Q+ H  +  +K  ND++ T  +  +  +     + + + +   GF+S I + K
Sbjct: 907  RLEQAL-QHVHRNEIALKELNDRFRTVSDSQKEVEKQNKVLHAIIKEKEKGFSSSISKEK 965

Query: 224  HNQKMMSFVFQN*TGF 271
               + M  V ++  GF
Sbjct: 966  EFTECMRCVVESMRGF 981


>03_01_0167 +
           1374578-1375243,1375895-1376277,1377947-1378007,
           1378721-1379386
          Length = 591

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 59  LRQYTHAPDSVVKRGNDKYXTTYEQTRLGDGSTSKMMSF 175
           L+++   P    KRGN     T ++   GDGS+S   S+
Sbjct: 157 LQEFCSLPVDSTKRGNGAKAATQQEDGRGDGSSSSSASW 195


>10_02_0144 + 5815403-5815520,5815551-5816314
          Length = 293

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 80  PDSVVKRGNDKYXTTYEQTRLGDGSTSKMMSFV 178
           PD VVK G+++Y    E+T+   G   +  S V
Sbjct: 236 PDPVVKEGDEQYRRLVEETKSAAGRERRRESAV 268


>02_04_0300 +
           21784634-21784691,21784784-21784893,21787486-21787771,
           21788292-21788472,21788978-21789195,21789511-21789631,
           21789703-21789800,21789894-21790105,21790199-21790311,
           21790404-21790499,21790626-21790841,21790958-21791099,
           21791280-21791525,21792078-21792389
          Length = 802

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 323 KQMTSSFDCVLHVEFYS*SQFSFEKQMTSSFDCVLH 216
           KQ+      +LH+ +Y    FS  K+M S+ D V++
Sbjct: 759 KQLFWKMCKILHLFYYQTDGFSSPKEMVSAVDAVIN 794


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,495,219
Number of Sequences: 37544
Number of extensions: 122007
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)