Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12k22
         (328 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071083-1|AAL48705.1|  637|Drosophila melanogaster RE15157p pro...    27   5.5  
AE014297-2197|AAN13707.1|  637|Drosophila melanogaster CG14880-P...    27   5.5  
AE014297-2196|AAF55306.2|  637|Drosophila melanogaster CG14880-P...    27   5.5  
AE014297-1451|AAF54749.1| 1718|Drosophila melanogaster CG14741-P...    27   7.3  
AE013599-3919|AAF47242.2|  430|Drosophila melanogaster CG13588-P...    27   7.3  

>AY071083-1|AAL48705.1|  637|Drosophila melanogaster RE15157p
           protein.
          Length = 637

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 54  RVYASIPMLQTAS*KEAMTNTKRHMSRPVLATGLP 158
           R   + P     S KE  T T R +SRP    G+P
Sbjct: 346 RTSTAAPFSPVPSRKEVSTTTPRPLSRPTTLAGVP 380


>AE014297-2197|AAN13707.1|  637|Drosophila melanogaster CG14880-PB,
           isoform B protein.
          Length = 637

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 54  RVYASIPMLQTAS*KEAMTNTKRHMSRPVLATGLP 158
           R   + P     S KE  T T R +SRP    G+P
Sbjct: 346 RTSTAAPFSPVPSRKEVSTTTPRPLSRPTTLAGVP 380


>AE014297-2196|AAF55306.2|  637|Drosophila melanogaster CG14880-PA,
           isoform A protein.
          Length = 637

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 54  RVYASIPMLQTAS*KEAMTNTKRHMSRPVLATGLP 158
           R   + P     S KE  T T R +SRP    G+P
Sbjct: 346 RTSTAAPFSPVPSRKEVSTTTPRPLSRPTTLAGVP 380


>AE014297-1451|AAF54749.1| 1718|Drosophila melanogaster CG14741-PA
            protein.
          Length = 1718

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 128  HMSFXICHCLFSRRCLEHGYTGVDPFHXVVLYLF 27
            + +F +CHC +S  C     T  DP    V  LF
Sbjct: 1355 NFAFTLCHCWYSLFCGFSAQTVFDPMFISVYNLF 1388


>AE013599-3919|AAF47242.2|  430|Drosophila melanogaster CG13588-PA
           protein.
          Length = 430

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 80  PDSVVKRGNDKYXTTYEQTRLGDGSTS 160
           P+    R ND + TT E+ +LGD +T+
Sbjct: 231 PNKKTARMNDSFFTTEEKKKLGDYNTN 257


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,733,660
Number of Sequences: 53049
Number of extensions: 210124
Number of successful extensions: 366
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 693319869
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)