Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12k22
         (328 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   3.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   3.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   6.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   8.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   8.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   8.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   8.8  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 133 DPSWRRVYL*DDVICFSKL-NWLYE*NSTCKTQSKDDVICFSKLN 264
           D   + + + +D+  F ++ NW+ + NS     +++ + CF  +N
Sbjct: 525 DSHHKLIEIPEDLKYFYEIDNWMLDLNSGLNKITRNSLDCFFTMN 569


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 133 DPSWRRVYL*DDVICFSKL-NWLYE*NSTCKTQSKDDVICFSKLN 264
           D   + + + +D+  F ++ NW+ + NS     +++ + CF  +N
Sbjct: 525 DSHHKLIEIPEDLKYFYEIDNWMLDLNSGLNKITRNSLDCFFTMN 569


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 101  GNDKYXTTYEQTRLGDGSTSK 163
            G+DK    Y+QT +G  +  K
Sbjct: 1614 GSDKDDVVYQQTGVGGATLDK 1634



 Score = 20.2 bits (40), Expect = 6.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 140  DGSAHMSFXICHCLFSRRC 84
            D   HM   + HC  +RRC
Sbjct: 1683 DPRRHMYEELNHCAPNRRC 1701


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 169 VICFSKLNWLYE*NST 216
           ++C S L+W    NST
Sbjct: 295 ILCMSDLHWQLPHNST 310



 Score = 20.2 bits (40), Expect = 6.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 241 VICFSKLNWLYE*NST 288
           ++C S L+W    NST
Sbjct: 295 ILCMSDLHWQLPHNST 310


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +3

Query: 27  EQIQNDXMKRVYASIPMLQTAS*KEAMTNTKRHMSRPVLA 146
           E+ Q+D +K +  +   L   S    +  TK + + P++A
Sbjct: 420 EKSQDDCLKAIKENNADLTVVSGGSVLRATKEYNTVPIIA 459


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +3

Query: 27  EQIQNDXMKRVYASIPMLQTAS*KEAMTNTKRHMSRPVLA 146
           E+ Q+D +K +  +   L   S    +  TK + + P++A
Sbjct: 420 EKSQDDCLKAIKENNADLTVVSGGSVLRATKEYNTVPIIA 459


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +3

Query: 27  EQIQNDXMKRVYASIPMLQTAS*KEAMTNTKRHMSRPVLA 146
           E+ Q+D +K +  +   L   S    +  TK + + P++A
Sbjct: 420 EKSQDDCLKAIKENNADLTVVSGGSVLRATKEYNTVPIIA 459


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 326  EKQMTSSFDCVLHVEFY 276
            +K +T++ DC    E+Y
Sbjct: 956  KKHITTTIDCSTQSEYY 972



 Score = 19.8 bits (39), Expect = 8.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 254  EKQMTSSFDCVLHVEFY 204
            +K +T++ DC    E+Y
Sbjct: 956  KKHITTTIDCSTQSEYY 972


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,798
Number of Sequences: 438
Number of extensions: 1302
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)