Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12k21
(282 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803... 118 7e-28
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603... 117 2e-27
07_01_0385 - 2871628-2872131 28 1.3
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 27 1.7
09_06_0303 - 22149214-22149474,22150099-22150236,22150856-221511... 27 1.7
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 26 3.9
02_01_0679 - 5048653-5051394 26 3.9
07_03_0039 - 12718972-12720699 26 5.2
02_03_0063 + 14600318-14600322,14600936-14601011,14601615-14601776 25 6.8
11_01_0401 - 3020606-3020932,3021480-3021626,3021711-3021878,302... 25 9.0
04_04_1651 - 35057525-35057680,35058302-35058311,35058429-350585... 25 9.0
03_05_0669 + 26589867-26589927,26590674-26590858,26590950-265910... 25 9.0
01_02_0071 + 10822008-10822011,10822219-10822364,10822452-108225... 25 9.0
01_01_0340 + 2727135-2727205,2727470-2727639,2728418-2728506,272... 25 9.0
>05_07_0070 +
27479654-27479672,27479864-27479922,27480339-27480378,
27480477-27480565,27481065-27481147,27481219-27481282
Length = 117
Score = 118 bits (284), Expect = 7e-28
Identities = 50/81 (61%), Positives = 63/81 (77%)
Frame = -1
Query: 249 KMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKR 70
++ KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK
Sbjct: 25 ELTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKD 84
Query: 69 CKRTVAGGAWVFSTTAASSMQ 7
C + AGGA+ +T +A +++
Sbjct: 85 CGKVKAGGAYTMNTASAVTVR 105
>01_06_0260 -
27959188-27959251,27959342-27959424,27960220-27960308,
27960388-27960427,27960938-27960981,27961240-27961288
Length = 122
Score = 117 bits (281), Expect = 2e-27
Identities = 50/78 (64%), Positives = 61/78 (78%)
Frame = -1
Query: 240 KRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKR 61
KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK C +
Sbjct: 33 KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGK 92
Query: 60 TVAGGAWVFSTTAASSMQ 7
AGGA+ +T +A +++
Sbjct: 93 VKAGGAYTMNTASAVTVR 110
>07_01_0385 - 2871628-2872131
Length = 167
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -1
Query: 138 YTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAW 40
+ C FC K K +G K VAGG+W
Sbjct: 47 FPCLFCAKTFRKSQALGGHQNAHRKERVAGGSW 79
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 27.5 bits (58), Expect = 1.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 159 EVTQHAKYTCSFCGKDAM 106
E+ +H KYTC C K A+
Sbjct: 194 EMVEHNKYTCPICSKTAL 211
>09_06_0303 -
22149214-22149474,22150099-22150236,22150856-22151100,
22151344-22151809
Length = 369
Score = 27.5 bits (58), Expect = 1.7
Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Frame = -1
Query: 276 STFVSERFTKMAKRTKKVG-ITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKR 100
S + RF ++V K G Y L K AKYT G A R
Sbjct: 60 SDMMKSRFEAFKANARQVNEFNKKEGMSYTLGLNKFSDMSYEEFAAKYTGGMPGSIADDR 119
Query: 99 SCVGIWSCKRCKRTV 55
S G SCK ++ V
Sbjct: 120 SSAGAVSCKLREKNV 134
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 26.2 bits (55), Expect = 3.9
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -2
Query: 281 LCQLLYRRGLPKWP 240
+C LY+R PKWP
Sbjct: 768 VCMSLYKRAYPKWP 781
>02_01_0679 - 5048653-5051394
Length = 913
Score = 26.2 bits (55), Expect = 3.9
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = -2
Query: 275 QLLYRRGLPKWPNVPKRLELLANMAHVTV-----PLYVKWSK-RWK 156
++L LP VPK LELLA++ + V L V+W + WK
Sbjct: 857 EVLLLLSLPSLREVPKGLELLASLKKLNVTMQHHELKVEWERDNWK 902
>07_03_0039 - 12718972-12720699
Length = 575
Score = 25.8 bits (54), Expect = 5.2
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 32 ENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTSIFLTILRR 184
EN A +LH +D + QERF L + + C + S+F IL +
Sbjct: 416 ENKIATKIIAVLHSNRDTL--QERFDCLLERGLEYKMLCQIVSVFPKILNQ 464
>02_03_0063 + 14600318-14600322,14600936-14601011,14601615-14601776
Length = 80
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = -1
Query: 279 LSTFVSERFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAK 139
L ++ + + K + G+T + +RY LR+ ++K+EV K
Sbjct: 13 LEVYMLTIYLLLHKNQVRHGVTARRTSRYYVVLRRELRKLEVVGKVK 59
>11_01_0401 -
3020606-3020932,3021480-3021626,3021711-3021878,
3021960-3022218,3024469-3024522,3025200-3025375
Length = 376
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/31 (29%), Positives = 14/31 (45%)
Frame = -1
Query: 132 CSFCGKDAMKRSCVGIWSCKRCKRTVAGGAW 40
C + G + ++ CV IW+ R G W
Sbjct: 284 CRYIGPNKLRNFCVDIWNWLRAVPEKLQGKW 314
>04_04_1651 -
35057525-35057680,35058302-35058311,35058429-35058569,
35058675-35058784,35058907-35059006,35059108-35059308,
35059674-35059879,35060504-35060716,35060785-35060923,
35061370-35061606,35061688-35061893,35062664-35062759,
35062900-35063040
Length = 651
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -2
Query: 242 PNVPKRLELLANMAHVTVPLYVKWSKRWK*PNTQSILAHFVVRML 108
P+ R L +A + +P Y + KR+ NTQ L+ ++R++
Sbjct: 569 PDTELRESLRLAVAEILLPAYRSFLKRFGLSNTQEFLSLELMRLV 613
>03_05_0669 +
26589867-26589927,26590674-26590858,26590950-26591045,
26591128-26591223
Length = 145
Score = 25.0 bits (52), Expect = 9.0
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = -2
Query: 236 VPKRLELLANMAHVTVPLYVKW 171
+P EL+ +++ +P+YV W
Sbjct: 84 LPDASELIVGSSYICIPVYVSW 105
>01_02_0071 +
10822008-10822011,10822219-10822364,10822452-10822544,
10822722-10822781,10822855-10823127,10823229-10823303,
10823419-10823475,10823593-10823733,10823813-10823863,
10823905-10823955,10823956-10824051,10824159-10824242,
10824330-10824432,10824518-10824600
Length = 438
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 192 GASLRKMVKKMEVTQHAKYTCSFCG 118
GAS+ +VK V QHAK C+F G
Sbjct: 415 GASMEFLVKL--VPQHAKKQCAFLG 437
>01_01_0340 +
2727135-2727205,2727470-2727639,2728418-2728506,
2729017-2729070,2729310-2729380,2729504-2729585,
2729678-2729774,2729902-2729972
Length = 234
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 227 RLELLANMAHVTVPLYVKWSKRWK*PNTQSILAHFVVRML 108
R + + + +T L++ W W P TQS + FV +L
Sbjct: 84 RSPVSSTLPQITGRLFITWGILWSFPETQSYI--FVTSLL 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,717,451
Number of Sequences: 37544
Number of extensions: 171337
Number of successful extensions: 440
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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