Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12k20
         (153 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    25   1.4  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   1.8  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    24   3.1  
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    24   3.1  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    23   4.1  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    23   7.2  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         23   7.2  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    23   7.2  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    23   7.2  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    22   9.5  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    22   9.5  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    22   9.5  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    22   9.5  

>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 9   SQINKYFTDFRNSFVIKKPINMPNYSYTP 95
           +Q+ KY++D       K  +  P Y YTP
Sbjct: 55  AQVKKYYSDLSALERQKHMLENPEYKYTP 83


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 82  IHTPPPSGVLTCTTINITKTW 144
           I+ PP + ++TC+T  +   W
Sbjct: 300 INNPPSNNIVTCSTDGLVHIW 320


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +1

Query: 76  RIIHTPPPSGVLTCTTINITKTW 144
           +++ TP P+ + +   INI++ W
Sbjct: 323 QLVRTPSPASLSSSELINISRDW 345


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 6   ISQINKYFTDFRNSFVIKKPINMP 77
           + +IN+ FTD  N   IK  +++P
Sbjct: 357 LKEINEAFTDMHNGNCIKTVLSIP 380


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 88  TPPPSGVLTCTTINITKT 141
           TP P+G  + TT+N T+T
Sbjct: 727 TPKPNGTNSVTTLNRTQT 744


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1018

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = +3

Query: 6    ISQINKYFTDFRNSFVIKKPINMPNYSYTPTI 101
            + +IN  ++D  +    KK +N+P+++ +P +
Sbjct: 919  LPEINSDYSDDSDDEGNKKKVNLPSWAESPEL 950


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 138 FCNIYCRTRKYARWWG 91
           F   YC+T K  RW G
Sbjct: 283 FTGNYCQTEKGVRWLG 298


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 125 IVVHVSTPDGGGV*IIRHIYRFFYYKTV 42
           +V H+   +GG V +++H   F   KTV
Sbjct: 68  VVRHLGEGNGGAVSLVKHRNIFMARKTV 95


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 141 SFCNIYCRTRKYARWWG 91
           +F N+Y  + +Y R+WG
Sbjct: 222 NFTNVYNTSCEYPRFWG 238


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 84  SYTPTIGRTYVYD 122
           SY   +GRTY++D
Sbjct: 289 SYCSNVGRTYLFD 301


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 93  PTIGRTYVYDN 125
           PTI +TYVY N
Sbjct: 562 PTITKTYVYSN 572


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 33  DFRNSFVIKKPINMPNYS 86
           +FRN  V KKPIN  + S
Sbjct: 352 EFRNWHVSKKPINNTDLS 369


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 82  IHTPPPSGVL 111
           IH PPPSG L
Sbjct: 171 IHVPPPSGKL 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 696,350
Number of Sequences: 5004
Number of extensions: 10653
Number of successful extensions: 35
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 31
effective length of database: 2,207,354
effective search space used: 41939726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)