Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12k20
(153 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 24 0.15
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 21 1.8
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 21 1.8
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 21 1.8
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 20 2.4
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 20 2.4
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 19 4.3
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 19 4.3
AB083209-1|BAC54133.1| 87|Apis mellifera hypothetical protein ... 19 4.3
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 19 5.6
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 19 5.6
DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein. 18 9.9
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 24.2 bits (50), Expect = 0.15
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 12 QINKYFTDFRNSFVIKKPINMPNYSYTPTIGR 107
++NK S +++P PNYS TIG+
Sbjct: 495 RLNKPLMSLITSSEVRQPGKAPNYSVNWTIGQ 526
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.6 bits (41), Expect = 1.8
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +3
Query: 96 TIGRTYVYDNKYYKNLGC 149
++ Y Y+N YK L C
Sbjct: 84 SLSNNYNYNNNNYKKLYC 101
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.6 bits (41), Expect = 1.8
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +3
Query: 96 TIGRTYVYDNKYYKNLGC 149
++ Y Y+N YK L C
Sbjct: 84 SLSNNYNYNNNNYKKLYC 101
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.6 bits (41), Expect = 1.8
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +3
Query: 96 TIGRTYVYDNKYYKNLGC 149
++ Y Y+N YK L C
Sbjct: 84 SLSNNYNYNNNNYKKLYC 101
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 20.2 bits (40), Expect = 2.4
Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Frame = +1
Query: 79 IIHTPPPSG--VLTCTTIN 129
I+H PP S LT TT N
Sbjct: 1362 IVHAPPHSPQITLTATTTN 1380
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 20.2 bits (40), Expect = 2.4
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = +2
Query: 68 KYAELFIHPHHRAY 109
+Y++L +HPH RA+
Sbjct: 37 EYSDL-VHPHWRAF 49
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 19.4 bits (38), Expect = 4.3
Identities = 4/13 (30%), Positives = 9/13 (69%)
Frame = -1
Query: 138 FCNIYCRTRKYAR 100
+C +YC +K+ +
Sbjct: 212 YCRLYCYAQKHVK 224
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 19.4 bits (38), Expect = 4.3
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +1
Query: 70 ICRIIHTPPPSGVLTCT 120
+C HT P +L CT
Sbjct: 158 VCEYDHTWWPYDILNCT 174
>AB083209-1|BAC54133.1| 87|Apis mellifera hypothetical protein
protein.
Length = 87
Score = 19.4 bits (38), Expect = 4.3
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -2
Query: 68 YRFFYY 51
YRFFYY
Sbjct: 82 YRFFYY 87
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 19.0 bits (37), Expect = 5.6
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +3
Query: 15 INKYFTDFRNS 47
+ K+FTD+ NS
Sbjct: 211 LEKFFTDYCNS 221
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 19.0 bits (37), Expect = 5.6
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +3
Query: 15 INKYFTDFRNS 47
+ K+FTD+ NS
Sbjct: 211 LEKFFTDYCNS 221
>DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein.
Length = 495
Score = 18.2 bits (35), Expect = 9.9
Identities = 4/7 (57%), Positives = 7/7 (100%)
Frame = +1
Query: 70 ICRIIHT 90
+CR++HT
Sbjct: 84 VCRVLHT 90
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,180
Number of Sequences: 438
Number of extensions: 798
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 30
effective length of database: 133,203
effective search space used: 2664060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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