Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12k15
(882 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 35 0.075
05_06_0204 + 26354319-26356967 30 2.8
07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012... 29 3.7
08_02_0874 - 22102158-22102333,22102354-22102498 29 4.9
08_01_1000 + 10154024-10154147,10155500-10155761,10155839-101558... 29 4.9
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 29 6.5
04_01_0058 + 592846-593185,594641-595182,596298-596987,597078-59... 29 6.5
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 29 6.5
12_02_0883 - 23982022-23982825 28 8.6
>06_03_0097 -
16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 35.1 bits (77), Expect = 0.075
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = -2
Query: 725 RVEIQWRPEALVCKRFNVPQPGGINTEEKHQERPKISYSVFSYMESSVHDRDSFAKEQVA 546
R E +WRP ++CKRF++ P + H +RP+ +M S + +A
Sbjct: 646 REEFEWRPSPILCKRFDIVDP--FMGKPFHVQRPRSKMDSLIFMSESTTRTNEVESSSIA 703
Score = 28.3 bits (60), Expect = 8.6
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Frame = -2
Query: 482 TSTSNKTELVG-APKRMTVAELFLKESEQNKNEGVQVTETINKFDKIDLYKSIFLSDSED 306
T+ +N+ E AP+ +VA E++ + + ++ + +DLYK+IF SD D
Sbjct: 691 TTRTNEVESSSIAPQHTSVAGATETEAKGAATDPEIESSSVQR--PVDLYKAIF-SDDSD 747
Query: 305 EDVGQTKNNDRDFADAPKNLERNNSPPRGIFANIDFHEINSWKRPDKDVQEQKP 144
+D+ + N D K E N + A DF E + K DV +KP
Sbjct: 748 DDMAEPLANQP--VDPVKTSEDANMVLNRLVAE-DFLE-SLGKELGLDVPPEKP 797
>05_06_0204 + 26354319-26356967
Length = 882
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = -1
Query: 735 RCDQSGNTMAARSARVQEI*RSPTRRHQYRRKTSRATEDFLL 610
RC++SG+ + +SA QEI P + ++ SR ++ F+L
Sbjct: 806 RCNESGHLLNYKSAEYQEIGGEPFKLFALLQEDSRRSDKFVL 847
>07_03_1762 -
29299328-29299437,29299782-29299871,29300487-29301291,
29301956-29303278
Length = 775
Score = 29.5 bits (63), Expect = 3.7
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = -2
Query: 326 FLSDSEDEDVGQTKNNDRDFADAP--KNLERNNSPPRGIFANIDFHEINSWKRPDKDVQE 153
F+ D E+E+ +D + AP K + PPR K D D +E
Sbjct: 73 FVGDEEEEEEDLEDEDDLEEVKAPRPKRPPKGKPPPRS--------RRRRQKDDDDDYEE 124
Query: 152 QKPKDADGQPKVDK 111
++ +DAD P VD+
Sbjct: 125 EEEEDADFDPDVDE 138
>08_02_0874 - 22102158-22102333,22102354-22102498
Length = 106
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 542 SGSKSLNREPVKIDTRPVSVTSTSNKTELVG-APKRMTV 429
SGS S + V +D P +TS K ELVG P R+ V
Sbjct: 2 SGSTSPKKRHVHLDALPSCMTSVVAKGELVGEVPNRLAV 40
>08_01_1000 +
10154024-10154147,10155500-10155761,10155839-10155885,
10155967-10155998,10156079-10156146,10156214-10156605,
10156811-10157009,10157494-10157636,10157722-10158366,
10158493-10158551,10158725-10158823
Length = 689
Score = 29.1 bits (62), Expect = 4.9
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -2
Query: 191 INSWKRPDKDVQEQKPKDADGQPK 120
+N+ +P+ + Q P++ADGQP+
Sbjct: 506 VNAEAQPESQINPQSPRNADGQPE 529
>12_02_0522 -
19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = -1
Query: 741 LRRCDQSGNTMAARSARVQEI*RSPTRRHQYRRKTSRATEDFLLRLFVHGVFSTRQRQLR 562
LR G + +A V P +H+Y+ + +R L+ L VH ++S ++ LR
Sbjct: 327 LREGSLVGRRYESSAAAVDSSDTPPVEKHEYQAEVNR-----LMDLIVHSLYSNKEVFLR 381
Query: 561 ERTS 550
E S
Sbjct: 382 ELVS 385
>04_01_0058 +
592846-593185,594641-595182,596298-596987,597078-597233,
597277-597856,598601-598764,598907-599100,599702-599750,
599777-599806
Length = 914
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 263 DAPKNLERNNSPPRGIFANIDFHEINSWKRPDKDVQEQKPKDADGQPKV-DKVENV 99
D P +L+ + P R AN+ EI + + D +QK KDA P V D +N+
Sbjct: 567 DPPNDLK--DPPNRVAIANLTDWEIGTCSFANTDCGQQKDKDATSNPSVTDNDDNL 620
>02_04_0179 + 20682852-20684510,20684593-20684661,20684741-20684809,
20686779-20688206
Length = 1074
Score = 28.7 bits (61), Expect = 6.5
Identities = 24/127 (18%), Positives = 59/127 (46%)
Frame = -2
Query: 461 ELVGAPKRMTVAELFLKESEQNKNEGVQVTETINKFDKIDLYKSIFLSDSEDEDVGQTKN 282
E++G + E+ K+ + K+E ++ ++ D ++L I ++++ +
Sbjct: 922 EILGMMNNLHYVEVVYKDPKVMKSEKIK-----HQTDNVELQPHII----KEKEKKVKEE 972
Query: 281 NDRDFADAPKNLERNNSPPRGIFANIDFHEINSWKRPDKDVQEQKPKDADGQPKVDKVEN 102
++ A+ KN+ +S +D H + WK+ K+ ++K K+ + + + +N
Sbjct: 973 EEKCMAEIKKNMRIPDS-------TLDEHGV--WKKDQKEADQKKAKEEEEKHMAEIKKN 1023
Query: 101 VPAPDET 81
+ PD T
Sbjct: 1024 MGIPDST 1030
>12_02_0883 - 23982022-23982825
Length = 267
Score = 28.3 bits (60), Expect = 8.6
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -2
Query: 164 DVQEQKPKDADGQPKVDKVENVPAPDETYGPKIPDNFKPN-LASQTCKQDVTLE 6
D E PK + KVD N APD T IPDN P+ + Q K D+ L+
Sbjct: 90 DAPETPPKPTTSEVKVDSAVN--APDIT----IPDNKDPSVMQKQKKKLDLNLQ 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,149,554
Number of Sequences: 37544
Number of extensions: 542241
Number of successful extensions: 1678
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1677
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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